FMO08352.5prime Sequence
890 bp (890 high quality bases) assembled on 2010-06-02
> FMO08352.5prime
CAGTCGACATGGCAGCTGCACTGCCAGATCGGTTTAGTGCGGGCAAACGG
CAGTTCTGGCGCGAGTTTCTGGCCCTTTATCAGGGAATGCCAGAGCTGTG
GGACGTCCACCACCTCAATTACCGGAACAAGGAGTTGCGAAACCGGGCGT
ACGAGTTGCTGGAGAGGAAACTACGGGAGATACAGCCGAACGCTACGCGC
ACAGAAGTCGGCAGGCGCATCAACATATTTCGCACCAATTACAGGCGGGA
GCAGATGCGAATCCTCAAGCAGAAGGAGCTGGGGCTGCACTCTGATCTCT
GTAAGCCGACGCTCTGGTTCTACGACTACATGGGATTTCTCCTCACCCAG
GAGACCTTCCAGCACAGGACCAGAAAAGGTCGGGGCGGCAGACAGAAGCA
AGATTTTCGCAGGGAAAAGGATGACAAATACCCCTTGAAAAATCCAGATC
TCAACACGGAAAGCGTTTGTGATTGGCCGATCAAGGATGATAACGCTTTC
AACTACCAGTCCGAACCGACTGCCCCGCAATCCGAAGAGGGTTCCCTGCT
CAGTCCAAAATTGGAGATCATAGAGCCGGAAGAAGGGCAGTGTGAAGTCA
AAGAGGAAAATAGTTTGGGAAATTCATTGGAAACGAAAGAACCCACATCC
TCGATTCAAACAGATCCCGAGAACGAACGAGGAACTGCACCCATGCAACT
CAGCGAGTCCTCCGAAGTTCTGGCCAGATCCTGGGCTATCCAGTACGAGG
AAATGTCCCCCACGCAACGGATTCTGGCACGAAAGGCCATCGCAGACATC
CTGTTTGAGGGATGCATGGGCAACCTGCGAGTAAACCGCGGCGAACAACA
GAGCACCGTGGCAAATCATTTCGCAAGCTTTCTAGACCAT
FMO08352.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3386-RD | 1494 | CG3386-RD | 206..1069 | 9..872 | 4245 | 99.4 | Plus |
| CG3386-RC | 1508 | CG3386-RC | 446..1309 | 9..872 | 4245 | 99.4 | Plus |
| CG3386-RB | 1446 | CG3386-RB | 384..1247 | 9..872 | 4245 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 680861..681310 | 872..423 | 2235 | 99.8 | Minus |
| 3L | 28110227 | 3L | 681372..681786 | 423..9 | 2015 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:46:37 has no hits.
FMO08352.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:22:43 Download gff for
FMO08352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3386-RA | 330..1210 | 1..881 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:39 Download gff for
FMO08352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3386-RB | 376..1256 | 1..881 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:00 Download gff for
FMO08352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3386-RB | 376..1256 | 1..881 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:00 Download gff for
FMO08352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 680852..681310 | 423..881 | 98 | <- | Minus |
| 3L | 681373..681793 | 1..422 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:39 Download gff for
FMO08352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 680852..681310 | 423..881 | 98 | <- | Minus |
| arm_3L | 681373..681793 | 1..422 | 98 | | Minus |
