FMO08353.5prime Sequence
365 bp (365 high quality bases) assembled on 2010-06-02
> FMO08353.5prime
CAGTCGACATGTCGTTGCTGCTGCTCCTTTTGGCCGTCATCCTGCCGCAG
CGGCAGCTTCTGCCCTTCGTATCCGGAGGGTCCTGCCGGGAGGCGCAGCT
CTGCTGCAACGGCCGCGACTCGTCCTGCGTCGTCCAGAAGGCTCCCATCA
ATGCCATCATCGAGGATCTCAGCGACAAGCCCTGCTACTGTGACCACGCC
TGCCTCAAGCTCGGCGATTGCTGCGACGACTTCAAGGATCACTGTGGAGG
AGTCTTTAGGCGCCGAAAACTGAAGTCCATCCATCTGGCAGCCGGAAACT
GCCATAAGCACGGATCCGTTAAGAATGCAGCTGCAATGGCAATGATTGCA
AGCTTTCTAGACCAT
FMO08353.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42339-RA | 656 | CG42339-RA | 97..435 | 9..347 | 1695 | 100 | Plus |
| CG42339-RB | 2354 | CG15204-RA | 145..385 | 9..249 | 1205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11037474..11037715 | 250..9 | 1210 | 100 | Minus |
| X | 23542271 | X | 11036111..11036210 | 347..248 | 500 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:27:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6927 | 128..4 | 114 | 57.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6846 | 62..10 | 113 | 73.6 | Minus |
FMO08353.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:22:42 Download gff for
FMO08353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42339-RA | 87..435 | 1..347 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:09 Download gff for
FMO08353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42339-RA | 87..435 | 1..347 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:34 Download gff for
FMO08353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42339-RA | 87..435 | 1..347 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:34 Download gff for
FMO08353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11036111..11036208 | 250..347 | 100 | <- | Minus |
| X | 11037475..11037720 | 1..249 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:09 Download gff for
FMO08353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10931508..10931753 | 1..249 | 98 | | Minus |
| arm_X | 10930144..10930241 | 250..347 | 100 | <- | Minus |
