Clone FMO08354 Report

Search the DGRC for FMO08354

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:83
Well:54
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11089-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08354.5prime Sequence

1131 bp (982 high quality bases) assembled on 2010-06-02

> FMO08354.5prime
CAGTCGACATGAGCTCCAGCAAGATTGCTCTTCTCAGTGTGTCGGACAAG
ACGGGCCTGCTCGACTTGGGCAAGAGTTTGGTGGCACTGGGCTTTGACCT
GGTTGCCAGTGGAGGCACTGCAACTAGCTTGCGTGGCGCTGGCCTGAAGG
TGAGGGATGTCTCGGAGATTACAGGAGCACCTGAGATGCTCGGTGGACGT
GTGAAGACGCTGCACCCGGCTGTGCATGCTGGAATCCTTTCCCGCACCAC
CGACTCTGATCTGGCTGACATGCGCAAGCAGGGCTTCGATCTTATCCAGC
TGGTGGTCTGCAATCTGTACCCCTTCGCCAGCACCGTAGCGAAGCCTGAT
GTTACGCTGGCCGATGCCGTGGAGAACATCGATATTGGAGGCGTTACTCT
GCTCCGGGCGGCTGCTAAGAATCACCAGCGAGTCACAGTTGTCTGCGAAG
CAGTGGATTATGATCGTGTCCTGTCGGAGTTGAAGGCTTCGGGGAATACC
ACCGTGGAGACGCGTCAGGCTCTGGCTCTCAAGGCATTCACGCACACCGC
CACCTACGATGATGCCATCTCAGATTACTTCAGGAAACAGTATGGATCTG
GGGTGTCCCAGCTACCGTTGCGCTATGGCATGAATCCCCACCAGAAGCCG
GCTCAGCTCTACACGCAGCTGGCCAAGCTTCCACTGACGGTCCTCAATGC
CTCGCCGGGATTTATCAACCTGTGCGACGCCCTCAACGGTTGGCAGTTGG
TTAGGGAACTGAAGAAGCTCTGCAGCTGCCGGCGGCCACCAGCTTTAAGC
ACGTTTCTCCAGCGGGTGCGGCTGTTGGAGTGCCTCTAAATCCGGACAGG
CCAAGCTGTGCATGGTGGATGATCTGTACGAGCAGTTGACACCTCTGGCA
ACGGCCTATGCTCGTGCCCGTGGGTGCCGACCGCATGAGCTCCCTTCGGC
GACTTTGTGGGCCTCTCTGATGTGTGCGATGTTGTGACGGCCAAGATATC
TCGCGAAGAGGTGTCCGATGGATTATGGCGCGGGTTATGAGCCCGAAGCT
CTGGAATCCTGAAAAAAGAGAATGGCGCTACTGTTACTTCCGAATGGACC
CACTACGACCCTCGCGGGGAACGCAGAATAT

FMO08354.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11089-RB 2195 CG11089-RB 57..1186 8..1125 5085 97.6 Plus
CG11089-RA 2272 CG11089-RA 134..1263 8..1125 5085 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24879176..24880224 27..1072 4720 98.6 Plus
Blast to na_te.dros performed on 2014-11-28 23:37:22 has no hits.

FMO08354.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:22:41 Download gff for FMO08354.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 104..1199 1..1088 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:09 Download gff for FMO08354.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11089-RE 1946..3041 1..1088 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:08:48 Download gff for FMO08354.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 127..1222 1..1088 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:08:48 Download gff for FMO08354.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24879177..24880210 28..1058 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:09 Download gff for FMO08354.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20704899..20705932 28..1058 98 -> Plus