FMO08356.5prime Sequence
668 bp (668 high quality bases) assembled on 2010-06-02
> FMO08356.5prime
CAGTCGACATGCTGAAACCATTCGCCGTGATTATCGGAATTTTTTATTTA
GGTTCCACCATTAAGGGCGTCGTGGCCATTCTGAACTGTATCCTAGCACG
TCAGCTATGCTTCGAGGATCCCTCATGTTCGGCCATTTTGGAAATAATAC
CTCGCGTCTGCGGACCCATTCCAGTGTCCTGCAGCACGGTGACGGTGACC
AAGTGTCAGGCTGCCCTGCGCACCCTGCAGGCCTTCCAGTTCTTTCGGCC
CACCTGCCTGTGCAAGGAGCCCGGAATGGATCCGGACTGCAATCACTTTC
GGGACTTTCTCTTCGATCATCCATGCGGATTTGTGCTGAAGAAAGCCGAA
AAGGATCCGTACCCCATTGATGCCCTACCAACTTGCAACCATGCACTTTC
CGTCTGCCAACAGGAACGCAAATGTCTAAAGCTCTTCGAGGACTTCAAAA
CGCATTGCAAAGTGCGCGACAACAAATGCAAAATGGAAAACAGGGACGCC
TGCCACGACTCCTGGACCAACCTGCGTCTGTCGCCCATGTTCGGATGCAT
CTGCCCGAACAACCATATGAAAAAGCGCTGTGATCGTATCTTTAATATTG
TTAATCACAATCCTTGCGTGGGTAAGTTTCGACTGGCGATGCTGAACTGT
GCAAGCTTTCTAGACCAT
FMO08356.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfrl-RK | 3139 | CG43224-RK | 1610..2253 | 7..650 | 3220 | 100 | Plus |
| Gfrl-RF | 6524 | CG43224-RF | 1610..2226 | 7..623 | 3085 | 100 | Plus |
| Gfrl-RJ | 6630 | CG43224-RJ | 672..1286 | 7..621 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20403224..20403397 | 345..172 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 20401150..20401309 | 650..491 | 800 | 100 | Minus |
| 3R | 32079331 | 3R | 20403012..20403162 | 494..344 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 20411082..20411206 | 174..50 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 20465005..20465051 | 53..7 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:45 has no hits.
FMO08356.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:22:38 Download gff for
FMO08356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34118-RA | 1565..2216 | 1..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:33 Download gff for
FMO08356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfrl-RK | 1602..2253 | 1..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:33 Download gff for
FMO08356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfrl-RK | 1602..2253 | 1..650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:33 Download gff for
FMO08356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20411082..20411204 | 52..174 | 100 | <- | Minus |
| 3R | 20465007..20465053 | 1..51 | 92 | | Minus |
| 3R | 20403224..20403394 | 175..345 | 100 | <- | Minus |
| 3R | 20401150..20401306 | 494..650 | 100 | <- | Minus |
| 3R | 20403013..20403160 | 346..493 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:33 Download gff for
FMO08356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16226872..16227028 | 494..650 | 100 | <- | Minus |
| arm_3R | 16228735..16228882 | 346..493 | 100 | <- | Minus |
| arm_3R | 16228946..16229116 | 175..345 | 100 | <- | Minus |
| arm_3R | 16236804..16236926 | 52..174 | 100 | <- | Minus |
| arm_3R | 16290729..16290775 | 1..51 | 92 | | Minus |
