FMO08366.5prime Sequence
1112 bp (978 high quality bases) assembled on 2010-06-02
> FMO08366.5prime
CAGTCGACATGCCTTTCGTTCCCGTTGAAACCCCCAAGTGCCCCGCGTGC
GGCAAGTCGGTCTACGCTGCCGAGGAGCGCGTTGCCGGAGGCTACAAATT
CCACAAGACCTGCTTCAAGTGCAGCATGTGCAACAAGGCCCTGGACTCGA
CCAACTGCACGGAGCACGAGAAGGAGCTTTTCTGCAAAAACTGCCATGGT
CGCAAATACGGTCCCAAGGGATACGGTTTCGGTGGTGGTGCCGGCTGCCT
GTCCACGGACACTGGCGCCCACTTAAACAGAGAATTCGTTCCGCCCAAGA
TTCCCCCAAAAGCACCCGACGGGCTGGGCTGCCCACGGTGTGGCATATAT
GTGTATGCCGCCGAGCAGATGCTGGCCAGAGGAAAGGGTTACCATCGAAG
GTGCTTTAAGTGCGTGCAATGCAACAAGACTCTAGACTCAACTCTTCACT
GTGATGGTCCGGACAAGGACATTTACTGTAGAGGATGTTATGCTCAGAAG
TTTGGGGCCAGGGGTTACGGGCACATCGGCATTTCGTCCTTGGGGTTGAT
GTCCGACATCAGGGATAGCGAGTGGCAAAGCGACATGGCTCCCAAAGCCT
CCATCATAAATGTGGAGCAAATCCAGGCGCCAATCGGAGAAGGATGCCCA
CGTTGTGGCGGCGTAGTATTCGCCGCGGAACAAGTTCTCTCCAAGGGAAG
GAGCTGGCACCGGAAGTGCTTCAAGTGTCGGGACTGCACCAAAACTCTGG
ACTCCATTATCGCGTGCGATGGTCCGGACAATGAGGTCTACTGCAAGACT
TGCTATGGCAAGAAGTGGGGACCCCATGGCTACGGATTCGCCTGTGGATC
CAGTTTCCTGCAAACCGACGGCATTACTGAGAGAACTTGGCATCCGAACG
ACCCTTTGTGGCTCCGGACAACACTTCGATCATGGCTCCGGACGGCGAGG
GATTTCCCCGATGTGGGCGGAACGGTCTTGCGGCCGACTGCAACTTGTCC
AAGGGAAGAAGACCACAGGAGTGCTTCACTGCGCCAGTGCACCCGACCTG
GATCGTGGCTGCCTGTGGACGAACGATGTAAATATCTAATGGAGCTCTGC
TTACCGAGCCTT
FMO08366.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlp60A-RC | 2468 | CG42309-RC | 493..1597 | 9..1101 | 4930 | 97.3 | Plus |
| Mlp60A-RB | 2058 | CG42309-RB | 83..1187 | 9..1101 | 4930 | 97.3 | Plus |
| Mlp60A-RE | 440 | CG42309-RE | 83..357 | 9..283 | 1375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24076652..24076950 | 579..877 | 1495 | 100 | Plus |
| 2R | 25286936 | 2R | 24075449..24075608 | 124..283 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 24075223..24075338 | 9..124 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 24076181..24076284 | 284..387 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 24076344..24076443 | 385..484 | 500 | 100 | Plus |
| 2R | 25286936 | 2R | 24076501..24076599 | 482..580 | 495 | 100 | Plus |
| 3R | 32079331 | 3R | 7115504..7115734 | 261..31 | 420 | 78.8 | Minus |
| 2R | 25286936 | 2R | 24077062..24077147 | 881..966 | 400 | 97.7 | Plus |
| 3R | 32079331 | 3R | 7114869..7115096 | 872..645 | 330 | 76.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:31 has no hits.
FMO08366.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:22:23 Download gff for
FMO08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlp60A-RB | 73..1142 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:25 Download gff for
FMO08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlp60A-RB | 74..1143 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:20 Download gff for
FMO08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlp60A-RB | 74..1143 | 1..1060 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:20 Download gff for
FMO08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24076654..24076950 | 581..877 | 100 | -> | Plus |
| 2R | 24076346..24076442 | 387..483 | 100 | -> | Plus |
| 2R | 24076503..24076599 | 484..580 | 100 | -> | Plus |
| 2R | 24075214..24075337 | 1..123 | 97 | -> | Plus |
| 2R | 24075449..24075608 | 124..283 | 100 | -> | Plus |
| 2R | 24076181..24076283 | 284..386 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:25 Download gff for
FMO08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19963869..19963965 | 387..483 | 100 | -> | Plus |
| arm_2R | 19964026..19964122 | 484..580 | 100 | -> | Plus |
| arm_2R | 19962737..19962860 | 1..123 | 97 | -> | Plus |
| arm_2R | 19962972..19963131 | 124..283 | 100 | -> | Plus |
| arm_2R | 19963704..19963806 | 284..386 | 100 | -> | Plus |
| arm_2R | 19964177..19964473 | 581..877 | 100 | -> | Plus |
