Clone FMO08380 Report

Search the DGRC for FMO08380

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:83
Well:80
Vector:pMK33-CFH-BD
Associated Gene/TranscriptApf-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08380.5prime Sequence

452 bp (452 high quality bases) assembled on 2010-06-02

> FMO08380.5prime
CAGTCGACATGGAAAAGGCAGCTGGTTTTGTTATTTTTCGCCGCCTTTGT
GGGGAAATACAATACCTATTGCTGAAGGCTTCCTACGGCTCCTTCCACTG
GAGTTCTCCCAAGGGACATGTGGACCCAGGCGAGGATGATTTTACCACTG
CCCTGCGAGAAACGAAAGAGGAAGCCGGGTACGACGAGAAGGATCTGATC
ATATACAAGGACACTCCGCTGACCCTGAATTATCAGGTGCAAGACAAGCC
GAAGATTGTTATTTACTGGCTAGCGGAGCTGCGGAATCCCTGCCAGGAGC
CCATTCTCTCCGAGGAGCACACCGACCTCAAGTGGCTGCCCAAGGAGGAG
GCCAAGCAGTGCGTCGGCTTTAAGGATAACCAAGTCATGATCGACAAGTT
CCACCAAATGATTTTAGATCAAAACAAACCAATGGCAAGCTTTCTAGACC
AT

FMO08380.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Apf-RA 555 CG31713-RA 51..478 7..434 2140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9938255..9938511 434..178 1285 100 Minus
2L 23513712 2L 9938568..9938740 179..7 865 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:59:05 has no hits.

FMO08380.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:22:09 Download gff for FMO08380.5prime
Subject Subject Range Query Range Percent Splice Strand
Apf-RA 43..481 1..441 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:18 Download gff for FMO08380.5prime
Subject Subject Range Query Range Percent Splice Strand
Apf-RA 46..484 1..441 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:41 Download gff for FMO08380.5prime
Subject Subject Range Query Range Percent Splice Strand
Apf-RA 46..484 1..441 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:41 Download gff for FMO08380.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9938249..9938510 179..441 98 <- Minus
2L 9938565..9938745 1..178 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:18 Download gff for FMO08380.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9938249..9938510 179..441 98 <- Minus
arm_2L 9938565..9938745 1..178 96   Minus