FMO08387.5prime Sequence
593 bp (593 high quality bases) assembled on 2010-06-02
> FMO08387.5prime
CAGTCGACATGAAGAACCAAAAAAATATAACCATTATACTAACTGGGCCA
CCAGGAGTGGGTAAAACTACACTGGTCCACAAAATATGCTCGGCTCTGCA
GGATAGAGGACGCATTCTTCAAGGATTCTACACAGAGGAAATGCGAGGTG
AGGGCACCAGCCAAAGAATCGGCTTCGACGTGGTCACGTTAGCCGGAAAA
CGAGCAATCCTATCTCGCAAGAATCCCGGGGACCAGCTGCGACGACCCAA
AGTGGGAGAGTATTCGGTGTTTGTGCAGGACTTCGACAGTCTCGCTCTGC
CAGTACTTGGCACACAGGATTCCCAACCAGAGCCGGATCTCCTGGTCGTG
GATGAAGTGGGCAAAATGGAGCTGCTTAGCAAGCGATTTGAGTCGGCCAT
GGCTGATCTCCTGAAGAAAAAGCGGGCCCTATTGGTCACCATACCCGAGA
AATCAACATTGGCTTTGGTGGAGCAGCTGAGAAAGTCAGCAGGATCCAAG
ATTTACCAGGTGACCAAATTCAATAGGAACGCCTTGGCTGGAGAGATTAC
AGAAGAGATTACAAAAGCACTTCTTGCAAGCTTTCTAGACCAT
FMO08387.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10581-RA | 587 | CG10581-RA | 8..578 | 5..575 | 2855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21033563..21034086 | 575..52 | 2620 | 100 | Minus |
| 3L | 28110227 | 3L | 21034146..21034196 | 55..5 | 255 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:58:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord | 7404 | accord ACCORD 7404bp | 2727..2764 | 546..583 | 109 | 76.3 | Plus |
FMO08387.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:22:02 Download gff for
FMO08387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10581-RA | 4..581 | 1..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:40 Download gff for
FMO08387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10581-RA | 4..581 | 1..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:36 Download gff for
FMO08387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10581-RA | 4..581 | 1..579 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:36 Download gff for
FMO08387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21033560..21034083 | 55..579 | 99 | <- | Minus |
| 3L | 21034147..21034199 | 1..54 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:40 Download gff for
FMO08387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21026660..21027183 | 55..579 | 99 | <- | Minus |
| arm_3L | 21027247..21027299 | 1..54 | 96 | | Minus |
