FMO08389.5prime Sequence
1156 bp (1033 high quality bases) assembled on 2010-06-02
> FMO08389.5prime
CAGTCGACATGTCCGCTTCACACTTCAGGGAGCAGCTCGCCCTGTGCATT
ACCCTGGCAGTGCTCGCCGCTGCCAGTGGCGACTACCGGGCCAACATGTT
TCTCAATGGCCAATATCAAAACGGTATCAAGGATCAAAAGGAGAACAACC
TTTTAGTAAACCCCTCGACGAACGTGTTCCTCAACCACGCCATAATCAGC
AGGCAAGCGTCGCCGTTCCAGGGCCCAACCTATCTGCCGCCCAAGGAGTT
CCTGAAGTGCGCTCCCGGCCAGCAGTGCGTCCGCAGTGGTCAGTGCCTGA
ACGGATATTTCGCCCAGCAACTGCCCAAGATTCAAAACTGTGATCCGGAA
ACCACCGTTTGCTGTACTTACAGGCCGCCTCCCACCACCACAACAACAAC
CACTACTTCCGTGCCAGTGGCCAATTGTGCCTACGACTCCGACTGTGTGA
CTCCGGACAACTGCCGGAACGGCGAAATTAGCGCCATAAACTACGTAAAG
AAGCAAGGACCCAACCGCTGCCCTGCTCCTAATATATGCTGCCGCATACC
CTCGACCACGCTAACGGAGGATGGGTACATTTTCAACCTTCCGGAAAAGA
CCTTCCCGCTGCCGACGAAACCAGCAGTGCTCGCGATGCCCTCCACCCAG
GCGCCGTTCCGCCCGCAACCTACGACTGCTGTGCCAGCTTCTCGACCCAC
CATTGAGTATTTGCCGCCCTCCACCACACAGCATCCCAGTTACGAGAAAG
TCCAGACAAGCCGACGGCCAGTCTACTTGCCACCTTCCCCGGCCACTGAG
TCGGCCAGCAGTCTCATCCCAAAAATTAGCCGAGGCCGGAGCCACGCCCC
CAGCCGACGCGCCGTCCAACGAATGAGTACCTGCCGCCTGCGGCCGCTAA
CGAAATCCCTCGCTTCGAGCTGACGCGCTCCGCAGCCATCAAACCAGAAG
CAATCTACCGCGGAGAAGGACCAGCTGTCGCCTAGATTTTTCCCACTCCC
CAGCCAGCCAATGTCCAAAACACTTTGCCAGTGCGCCTCAGCCTTATGGG
CACCTCTGAAACTCTTGCACGCCATCGGAGTGCTTTCTGAAACCCGTAAA
GCTTGTTCATGAGCACTTTCGAGTGCCTACGACGTTGGACAGAGAACGCT
CCCCGG
FMO08389.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scaf-RA | 3390 | CG11066-RA | 455..1551 | 8..1095 | 5140 | 98.5 | Plus |
| scaf-RB | 3043 | CG11066-RB | 108..1204 | 8..1095 | 5140 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5679923..5680517 | 1095..510 | 2355 | 97.3 | Minus |
| 2R | 25286936 | 2R | 5687676..5688003 | 335..8 | 1640 | 100 | Minus |
| 2R | 25286936 | 2R | 5684804..5684977 | 509..336 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:15 has no hits.
FMO08389.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:55 Download gff for
FMO08389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scarface-RA | 448..1563 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:17 Download gff for
FMO08389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf-RB | 101..1216 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:15 Download gff for
FMO08389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf-RB | 101..1216 | 1..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:15 Download gff for
FMO08389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5679911..5680517 | 510..1106 | 96 | <- | Minus |
| 2R | 5684804..5684977 | 336..509 | 100 | <- | Minus |
| 2R | 5687676..5688008 | 1..335 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:17 Download gff for
FMO08389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1567416..1568022 | 510..1106 | 96 | <- | Minus |
| arm_2R | 1572309..1572482 | 336..509 | 100 | <- | Minus |
| arm_2R | 1575181..1575513 | 1..335 | 99 | | Minus |
