FMO08392.5prime Sequence
1153 bp (1036 high quality bases) assembled on 2010-06-02
> FMO08392.5prime
CAGTCGACATGAGTCTGTACAACTTCAAAAAGATCATGGTGGTTCCGCCA
GCAAAGGACTTCATCGACATTATGCTGTCGAAGACACAGCGCAAGACCCC
GACGGTGGTCCACAAGGGCTACAAAATATCCAGAATCCGGGCATTCTACA
CGCGCAAGGTGAAGTACACGCAGCAGAACTTCCACGATCGCTTGTCGCAG
ATCATTCAGGACTTTCCCAAACTGGACGACGTGCATCCTTTCTACGCCGA
CTTGATGAACGTGCTGTACGACAAGGATCATTACAAGCTGGCGCTGGGTC
AACTCAACACAGCCAGGCATTTGGTGGACAATGTGGCCAAGGACTACGTG
CGCCTGCTGAAGTACGGTGACTCGCTGTATCGCTGCAAACAGTTGAAGAA
AGCTGCCCTGGGTCGCATGGCCACCATTATGAAGCGACAGGCCTCCAATC
TGACGTATCTGGAGCAAGTGCGTCAGCATCTCTCGCGTCTGCCCACCATC
GATCCCTATTCGCGTACCATCATCATCTGCGGTTTCCCCAACGTGGGCAA
GTCCTCGTTCATCAACAAGATCACCCGCGCCGATGTGGAAGTGCAGCCCT
ACGCCTTCACCACGAAATCCCTGTACGTGGGACACACAGACTACAAATAT
CTGCGCTGGCAGGTCATTGACACACCCGGCATCCTGGATCATCCCCTGGA
AGAGCGCAATGTGATCGAAATGCAAGCCATTACTGCCTTGGCTCATTTGC
GCGCCTGCGTCCTGTACTTCATGGATATCTCCGAGCAGTGCGGACACTCC
TTGGAGGAACAGGTCAAGCTGTTCGAGAGCATCAAGCCTTTGTTTACAAA
CAAACCCCTCATCCTGGCCATCAACAAGATCGATATTCTACACCAGAGGA
TCTGCCAGAGGAGCGACGAGCGATTATCACCAAACTACAGGAGGACAAGA
ACATTCTCGTAATGCTCATGTCCACCGTACAGGAACCGGTGTCATGGAGG
TGAAAACCGAGGCATGTGGAGCGTTTGCCTCTCGTACGTGTGACCAGAAG
AATGCGCCAAAAAAGGGGACAACATCCTGACCGCTTGCATGTGGGCGATG
CAGCGCGCAGATGACAACTTCTGTACCCCTGCATCCAAAAGGCTCGGCGC
TGG
FMO08392.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Non1-RB | 2276 | CG8801-RB | 104..1256 | 9..1150 | 5240 | 97.9 | Plus |
| Non1-RA | 2181 | CG8801-RA | 104..1256 | 9..1150 | 5240 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9397426..9398114 | 1018..332 | 3330 | 99.6 | Minus |
| 2R | 25286936 | 2R | 9398184..9398460 | 331..55 | 1385 | 100 | Minus |
| 2R | 25286936 | 2R | 9398583..9398631 | 57..9 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:53:22 has no hits.
FMO08392.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:54 Download gff for
FMO08392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-RA | 112..1247 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:17:32 Download gff for
FMO08392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-RA | 96..1231 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:58 Download gff for
FMO08392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Non1-RA | 96..1231 | 1..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:58 Download gff for
FMO08392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9397310..9398114 | 332..1128 | 97 | <- | Minus |
| 2R | 9398184..9398458 | 57..331 | 100 | <- | Minus |
| 2R | 9398584..9398639 | 1..56 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:17:32 Download gff for
FMO08392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5284815..5285619 | 332..1128 | 97 | <- | Minus |
| arm_2R | 5285689..5285963 | 57..331 | 100 | <- | Minus |
| arm_2R | 5286089..5286144 | 1..56 | 92 | | Minus |
