FMO08393.5prime Sequence
1087 bp (1018 high quality bases) assembled on 2010-06-02
> FMO08393.5prime
CAGTCGACATGCCCGACACGGAAATCATCGTTACCAATGCCGGGGAGCCC
TCCACCAAGGCGAGTCTCATCGTGGTATCCAATCGGTTGCCGTTTGTGCT
TATCCGAGATCCGAAGACCGATGAGTTGGAACGCAGGGCCAGTGCCGGTG
GCCTGGTGACTGCAGTGTGCCCGGTGGTGATCAAGGGCAGTGGTCTCTGG
GTGGGCTGGTCGGGTATCCACTTGAAGGATCCTAACGAGGCCATTCCCGA
GTCCAATCCCAACGATCAGACTCCGACTGCTGGCCTCAAGTCCGAGCAGG
TGGTGTCCGTCAACATCGATTCGAAGATCTTCGATAGCTACTACAACGGA
TGCTGCAACAAGATCTTCTGGCCACTGTTCCACTCGATGCCGGGAAGAGC
CAACTTCGGAGGCGAGCACTGGCACGACTATGTCACTGTCAACAAGCACT
TCGCCGTGCGGACCATCGAGGCTCTGGAGAAGTGCCTGGCCAAAAACCAG
GGCAGCGAGAAGAGTCCACCGATTGTCTGGATCCACGACTACCATCTCAT
GCTGGCCGCCAATTGGGTGCGCGAGCACGCCGAGGAGAAGAACCTGCCCT
GCCGACTGGCTTTCTTCCTGCACATCCCATTCCCGCCATGGGACATCTTC
CGCCTGCTGCCCTGGTCCGATGAGATCCTACAGGGTATGTTGGGTTGTGA
CCTGGTAGGCTTCCATATTCAGGACTATTGCCTTAACTTTGTGGACTGCT
GCCAGCGCAATCTCGGCTGCCGTGTGGACAGAAACAATCTGCTGGTGGAA
CATGGCGGGCGCACCGTTCGCGTCCGCCCGCTTCCCATTGGTATTCCCTA
CGAACGCTTCGTTAATTTGGCCACGACCGCGCCCAGTGCTAAAGACATCA
AGATGCAAATCATCCTGGGGAGTGGACCGACTGACTACCCAGGGCCTCCG
TCATACGCCTATATGGCTTTGAAGGCGCTGTCTGCTGAAGTATCCGCAGC
ACAGAAGAAGGTGAGCCTGCCTGCAATCTCGTGCCGTCCCAAACCGATGT
AAAAAAGTACCGAACCTGAAAGAAGAGGTGGACCACT
FMO08393.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tps1-RA | 2920 | CG4104-RA | 399..1480 | 9..1085 | 4875 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4390162..4390706 | 140..684 | 2725 | 100 | Plus |
| 2L | 23513712 | 2L | 4390796..4391204 | 682..1085 | 1215 | 92 | Plus |
| 2L | 23513712 | 2L | 4388725..4388858 | 9..142 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:38:44 has no hits.
FMO08393.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:53 Download gff for
FMO08393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tps1-RA | 398..1486 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:00 Download gff for
FMO08393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tps1-RA | 392..1480 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:55 Download gff for
FMO08393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tps1-RA | 392..1480 | 1..1085 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:55 Download gff for
FMO08393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4388718..4388858 | 1..142 | 97 | -> | Plus |
| 2L | 4390165..4390705 | 143..683 | 100 | -> | Plus |
| 2L | 4390798..4391204 | 684..1085 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:00 Download gff for
FMO08393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4388718..4388858 | 1..142 | 97 | -> | Plus |
| arm_2L | 4390165..4390705 | 143..683 | 100 | -> | Plus |
| arm_2L | 4390798..4391204 | 684..1085 | 93 | | Plus |
