FMO08394.5prime Sequence
1099 bp (946 high quality bases) assembled on 2010-06-02
> FMO08394.5prime
CAGTCGACATGGGTCTCCGGTTCCAGCAGCTGAAGAAGCTCTGGCTGCTC
TACCTTTTCCTGCTCTTCTTCGCGTTCTTCATGTTCGCCATCAGCATCAA
CCTGTACGTGGCCAGCATCCAGGGCGGGGACGCGGAGATGCGTCATCCGA
AACCGCCGCCCAAGCGCCGCTCCCTCTGGCCGCACAAAAACATCGTGGCC
CACTACATCGGCAAGGGAGACATCTTTGGCAACATGACAGCAGATGATTA
CAACATCAACCTGTTCCAGCCCATCAACGGAGAAGGTGCCGATGGGCGAC
CAGTTGTGGTGCCGCCTCGCGATCGCTTTCGCATGCAGCGCTTTTTCCGG
CTAAACAGCTTCAACCTGCTGGCCAGCGACCGCATCCCACTGAACCGCAC
CCTCAAGGACTACCGCACACCTGAATGCCGCGACAAGAAGTACGCCAGCG
GTCTACCCAGCACGTCGGTTATAATTGTTTTCCACAACGAGGCCTGGTCC
GTGCTCCTGCGAACCATCACCAGCGTCATCAACCGGTCGCCGCGCCACCT
GCTTAAGGAAATTATCCTGGTGGACGATGCCAGCGATCGCTCATATTTAA
AACGTCAACTGGAGAGCTATGTGAAAGTGCTGGCGGTACCCACGAGGATC
TTTCGCATGAAGAAGCGAAGTGGCTTAGTGCCTGCCCGCCTTTTGGGAGC
CGAAAATGCTCGCGGCGATGTGCTGACCTTCCTCGACGCCCACTGCGAGT
GCTCGCGGGGATGGCTGGAACCACTTCTTTCCCGCATTAAAGAATCACGC
AAGGTGGTATCTGCCCGGTAATCGACATAATATCCGATGACAACTTTAGC
TACAAAAACCTTCAGAACCACTGGGGCGCTTTCACTGGCAGCTGACTCCG
TTGTTCTTCTCGGATGTAGCGGCAGACAGCGGGCACAGCTTCCAGGATAG
ACTGACCGATGCCCCTCCCCGGAATGGCCGGGGATGTTTGTATCGATGCA
GTCTTTTCCAAATGGGATCTACAACGCACCTGCCGGTTCGGGGCGGCGAA
AGTGAATTGTCCTTCGGCATCTGGCATGTGAGCGGGTCGGTGCGGAAAT
FMO08394.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pgant3-RA | 2884 | CG4445-RA | 377..1470 | 9..1076 | 4575 | 96.2 | Plus |
| pgant5-RA | 4364 | CG31651-RA | 1338..1447 | 477..586 | 190 | 78.2 | Plus |
| pgant5-RB | 4340 | CG31651-RB | 1314..1423 | 477..586 | 190 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7059327..7059635 | 895..592 | 1315 | 98.1 | Minus |
| 2R | 25286936 | 2R | 7060283..7060467 | 424..240 | 925 | 100 | Minus |
| 2R | 25286936 | 2R | 7060057..7060223 | 591..425 | 835 | 100 | Minus |
| 2R | 25286936 | 2R | 7061223..7061356 | 142..9 | 670 | 100 | Minus |
| 2R | 25286936 | 2R | 7060812..7060917 | 247..142 | 515 | 99.1 | Minus |
| 2L | 23513712 | 2L | 5078239..5078348 | 586..477 | 190 | 78.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:31 has no hits.
FMO08394.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:22:06 Download gff for
FMO08394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant3-RA | 359..1372 | 1..1000 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:25 Download gff for
FMO08394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant3-RA | 391..1404 | 1..1000 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:25 Download gff for
FMO08394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant3-RA | 372..1385 | 1..1000 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:25 Download gff for
FMO08394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7060816..7060916 | 143..243 | 100 | <- | Minus |
| 2R | 7061223..7061361 | 1..142 | 97 | | Minus |
| 2R | 7059210..7059635 | 592..1000 | 94 | <- | Minus |
| 2R | 7060057..7060223 | 425..591 | 100 | <- | Minus |
| 2R | 7060283..7060463 | 244..424 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:25 Download gff for
FMO08394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2947562..2947728 | 425..591 | 100 | <- | Minus |
| arm_2R | 2946715..2947140 | 592..1000 | 94 | <- | Minus |
| arm_2R | 2947788..2947968 | 244..424 | 100 | <- | Minus |
| arm_2R | 2948321..2948421 | 143..243 | 100 | <- | Minus |
| arm_2R | 2948728..2948866 | 1..142 | 97 | | Minus |
