FMO08395.5prime Sequence
1163 bp (1025 high quality bases) assembled on 2010-06-02
> FMO08395.5prime
CAGTCGACATGGAATTATTTACTGTTAACAGATATACCGAGGATTTGAAA
GAACAAAAAGATGGGGCCCAAGGCACCAACAACGAGGATGAAATACTGCA
AAAATTGCTTAAGAAGGCTGCAAAACGCAAAAGGAAACATGAAGCCATAG
AAGTTGTAGAAACACCAATCCTGGAAAAAGAAACCTCAGATGTGAAGGAG
TCGGAATCCAAGGAGGAGCAGGTGGAAGAACCAGAAAAGCCCCTAGAAGT
TGTCCAAGAGGAAGATGTTCCGTCTAATGAGTTTCAAGTTCTTGGAGGCG
ATGATTCGGCGGCCAAGAAGAAGAAAGTGCAGATGCAGCTGCCCAATTGG
CTGGCACATCCAACCATCATTGAAGGTGGAAGCCTGCAGCCGGAGGAGGA
AGTGCCCGCCTCCGAGGCAATTGACCAGCTCGATTACCTGGAGAAGTACA
CATGTCAAGCTCTCAAGCAGATGAAGATTAAGCGGCTTTTTCCAGTCCAA
AAGCAGGTCATCCCATGGATCCTGGAGGCACACGCTAAGCCTCCTCCCTT
TCGTCCCCGAGATATTTGTGTATCTGCTCCTACAGGCAGTGGAAAAACCT
TGGCCTTTGCCATACCAATTGTCCAGTTGCTATCGCAGCGGGTGGATTGT
AAAGTAAGGGCTTTAGTCGTCCTTCCTGTGGCAGAGCTGGCCCTACAGGT
TTATCGGGTCATCAGTGAGTTGTGCAGCAAAACGGAGCTGGAGGTTTGCC
TTCTATCCAAGCAGCACAAACTAGAGGATGAGCAGAGAAGCTGGTGGAGC
AATACAAAGGCAAATACTACTCCAAGGCAGACATTGTGGTGACCACACCA
GGCCGCTTGGTTGACCATTTGCACGCCACGAAAGGTTCTGCCTGAAGAGC
CTAAAATTTTCTGGTCATTGACGAGCCGATCGAATAATGGAATGCAGTTT
TCCAAAACTGGCTTTATCATCTGGACAGTCATGTAAAGGAAACCACCGAC
AGCTGCTGGCCGCACTCAAGCCACTTCTTTTGCTATGCAGACTTCAAGCC
AGCTTTTGCAGCAACCTACGTAAGGCTTCTTGTTCTCTCGGGCGACAGTT
GTCTCAGAAATCCGAGAAGCTGCAAGATTCTACGATTCTTTTCAGCCTCG
TCTGTTTCCCCAC
FMO08395.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp73D-RA | 2209 | CG9680-RA | 85..1226 | 9..1156 | 5130 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16729836..16730660 | 852..29 | 4075 | 99.9 | Minus |
| 3L | 28110227 | 3L | 16729567..16729779 | 1060..849 | 595 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:07:46 has no hits.
FMO08395.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:22:05 Download gff for
FMO08395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp73D-RA | 70..1126 | 3..1056 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:11 Download gff for
FMO08395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp73D-RA | 78..1134 | 3..1056 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:33 Download gff for
FMO08395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp73D-RA | 78..1134 | 3..1056 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:33 Download gff for
FMO08395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16729571..16729776 | 852..1056 | 94 | <- | Minus |
| 3L | 16729837..16730657 | 32..851 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:11 Download gff for
FMO08395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16722671..16722876 | 852..1056 | 94 | <- | Minus |
| arm_3L | 16722937..16723757 | 32..851 | 99 | <- | Minus |
