FMO08396.5prime Sequence
1095 bp (998 high quality bases) assembled on 2010-06-02
> FMO08396.5prime
CAGTCGACATGGACGTATCCCAGCCGCCACCGCAGCTGCTCACGGCGCCC
TCGGCCCTGGCCACCAACTTCACATCGCTGCCCCCGCCGAACATGGGCGG
CCAGCACTACCGTCACTACCATCCGCACCATGGGTCCAACAAGCACGGCT
ACAACCAGTTCAAACCCTTCATGCCCGGCGGCTTCCAGCGACCCTTCGGA
ATGTCCCAGGACGACTTCGACGGCAAGCGACTGCGAAAAAGTGTGATGCG
GAAGACAGTTGACTACAACGCGTCCATCATCAAGGCACTGGAGAACCGAT
TGTACCAGCGGGACTATCGGGACCGTTTGGCTTTGCAGCCGGACAGCATT
TATGTGCCCCATATGCTGCCGCCCTCTGCCTACTTGGACAATCCTTCGAA
CGCGGTGACCACAAGGTTCGTGAAGACGGCTACCAATAAGATGCGATGTC
CGATTTTCACACTGGCCTGGACGCCAGAGGGCAGACGTTTGGTAACCGGG
GCCAGTTCCGGCGAGTTTACGCTATGGAACGGACTAACCTTTAATTTCGA
GACCATTCTGCAGGCCCACGACATTTCTGTGCGGACGATGGTGTGGTCGC
ACAACGACAGCTGGATGGTGACCGGCGACCATGGCGGCTATGTTAAGTAC
TGGCAGTCCAACATGAACAACGTGAAGATGTACCAGGCGCACAAGGAGGC
GATTAGGGGAATAAGTTTCAGTCCCACGGACAGCAAGTTCGTCAGCGGCA
GCGACGACGGAACCCTGAGGATATGGGACTTCATGCGGTGCCAGGAGGAG
CGAGTGCTACGAGGCCACGGTGCTGACGTCAAGTGCGTGCACTGGCATCC
ACAAAAGGAATGATCGTCAGCGGAAGCAAGGACAACCAGCAACCCATCAA
GATTTGGGATCCCAGGAGCGGCATTGCCCTGGCTACTCTACACGCCCACA
AATTCCACGTGATGGAATCTGAAGTGGAACGACAATGGCAACTGGCTGGT
ACGCATTCAGAGAATCATCTGCCTCAGCTCTTTCGAAATTCCACTGCGGG
AGGAGGTTCAGTCTTCTGGCCACAGAAGAAGCACTTCGTATTCTT
FMO08396.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1109-RB | 2785 | CG1109-RB | 229..1302 | 7..1074 | 4965 | 98.1 | Plus |
| CG1109-RA | 2798 | CG1109-RA | 242..1315 | 7..1074 | 4965 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5660962..5661248 | 7..293 | 1435 | 100 | Plus |
| 3R | 32079331 | 3R | 5661537..5661809 | 292..564 | 1365 | 100 | Plus |
| 3R | 32079331 | 3R | 5661863..5662017 | 561..715 | 775 | 100 | Plus |
| 3R | 32079331 | 3R | 5663215..5663343 | 812..939 | 580 | 98.4 | Plus |
| 3R | 32079331 | 3R | 5663061..5663161 | 714..814 | 505 | 100 | Plus |
| 3R | 32079331 | 3R | 5663419..5663479 | 940..1001 | 215 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:59 has no hits.
FMO08396.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:22:04 Download gff for
FMO08396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1109-RB | 219..1305 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:14 Download gff for
FMO08396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1109-RA | 234..1320 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:39 Download gff for
FMO08396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1109-RA | 234..1320 | 1..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:39 Download gff for
FMO08396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5661866..5662017 | 564..715 | 100 | -> | Plus |
| 3R | 5663063..5663160 | 716..813 | 100 | -> | Plus |
| 3R | 5663217..5663343 | 814..939 | 98 | -> | Plus |
| 3R | 5660954..5661248 | 1..293 | 98 | -> | Plus |
| 3R | 5661539..5661808 | 294..563 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:14 Download gff for
FMO08396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1488785..1488882 | 716..813 | 100 | -> | Plus |
| arm_3R | 1488939..1489065 | 814..939 | 98 | -> | Plus |
| arm_3R | 1486676..1486970 | 1..293 | 98 | -> | Plus |
| arm_3R | 1487261..1487530 | 294..563 | 100 | -> | Plus |
| arm_3R | 1487588..1487739 | 564..715 | 100 | -> | Plus |
