FMO08401.5prime Sequence
1106 bp (962 high quality bases) assembled on 2010-06-07
> FMO08401.5prime
CAGTCGACATGCAGCTGCTCTTATCGTCCGTTTGCATGGCGCTGACCAGC
GCGGTGATTGGATTTGCCTACTACCAAAAGCAGCAGTTCTATCCTGCGGT
GGTCTACATCACCAAATCGAACGCCTCCATGGGGGTCATATACATACAAT
TCTTTGTAATTGTCTTCATGTTCGGCAAGCTGCTAAGCAAGATCTTCCTG
GGCACTCTGCGTGCCGCAGAGTTTGAGCATCTGCTGGAGCGCTTTTGGTA
TGCCCTTACGGAGACCTGCTTGGCCTTTACCGTATTCCGGGATGACTTCA
ATCCGCGCTTTGTGGCCTTGTTCACGGTGCTTCTATTTCTCAAATCATTC
CATTGGCTAGCAGAGGAGCGGGTGGACTTTATGGAGCGTTCCCCCGTGCT
CGGCTGGCTTTTCCACATTCGCGTGGGCAGTCTGCTCACAGTGCTAGGCA
TCCTAGACTACGTTCTGTTGATCCATGCCTATAACTCCACTTTGGTGCGT
GGTCCCACCGTGCAGTTGGTCTTTGGCTTTGAATACGCCATCCTTCTGAC
CGTAATAGCCAGCACGGCCATCAAGTATGTGCTTCACGCCGCGGAAATGC
GCACGGACACGCCCTGGGAGAACAAGGCCGTGTTCCTGCTATATACAGAG
CTGGTCATTGGACTTATTAAGGTGGTCCTGTACATACTGTTTGTGGTGAT
CATGGCTAAAATATACGCGCTGCCCATGTTCGTATTCAGGCCTATGTTCT
TTACCATACGCAACTTCCGTAAGGCCCTAAATGACGTGATTATGTCCCGG
CGTGCCATTCGCACATGAATACCCTGTATCCCGACGCCACGCCTGAGGAG
CTGCGTCAGTCAGACAACATCTGCATCATTTTTTCGCGAGGACATGGTCA
ATCACTCAAAGAAACTGCCCTGCGGCCACATCTTCCATACCACATGCCTG
GCGCTCGTGGTTTCAGCGCCAGCGAACTTGTCCAACCTGCCGTTTGAACA
TCCTTCGAACTCCAACCGTGGACTCCACATGCGATGCCACGCAAAGCCAA
TGAATGCTGTGGCCCGCAGCTGCTGTAATCCCATTCCGGCTGCATAAAGG
TGTTCA
FMO08401.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip3-RB | 2660 | CG1937-RB | 335..1429 | 8..1106 | 5095 | 98 | Plus |
| sip3-RA | 2280 | CG1937-RA | 335..1429 | 8..1106 | 5095 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31773097..31773807 | 381..1094 | 3050 | 97.3 | Plus |
| 3R | 32079331 | 3R | 31772852..31773042 | 190..380 | 955 | 100 | Plus |
| 3R | 32079331 | 3R | 31772553..31772681 | 8..136 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 31772741..31772798 | 134..191 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:35:24 has no hits.
FMO08401.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:53 Download gff for
FMO08401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip3-RA | 331..1431 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:51 Download gff for
FMO08401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip3-RA | 328..1428 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:43 Download gff for
FMO08401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip3-RA | 328..1428 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:43 Download gff for
FMO08401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31772546..31772679 | 1..134 | 97 | -> | Plus |
| 3R | 31772742..31772798 | 135..191 | 100 | -> | Plus |
| 3R | 31772854..31773042 | 192..380 | 100 | -> | Plus |
| 3R | 31773097..31773817 | 381..1105 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:51 Download gff for
FMO08401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27598268..27598401 | 1..134 | 97 | -> | Plus |
| arm_3R | 27598464..27598520 | 135..191 | 100 | -> | Plus |
| arm_3R | 27598576..27598764 | 192..380 | 100 | -> | Plus |
| arm_3R | 27598819..27599539 | 381..1105 | 96 | | Plus |
