FMO08404.5prime Sequence
1141 bp (1032 high quality bases) assembled on 2010-06-07
> FMO08404.5prime
CAGTCGACATGGAGCTACGCGAACTGCGCGGTGGAAATGGTGGAAGCGTA
GGAGGCATTGGAGCAGCTACAACCGGAACCCCCGGAGTGTCAGTGAATGG
AGCCCCTAGTCCCGAACTAGGCGGCATCTGCATTGGAGGCGCCGCCGGAG
GACAGCGTATGCCCACCAGAGCGGATATATTTATGGAACAACTAAACGCC
ACCAATGCCAAGAAGGTGGCTTTGCTTCTGGTCCTCGGCTTCATCGTCTA
TCACGGCCTGCTCAACTGGAAATACGGCAGTGACTCCTGCCAGTGGCTGC
TGTCCAAGGGCCGATTTAAGGGCGACAACGAGTGGCAGCCGTACGGTTGC
ATGGTGCACAAGTACTCCCTCACTGACACAAGGCGCTGTTTGCGTTACCT
CGCCTTCTTCGACAACAAGAACAACTTTGTGTTCATTGGCGACGAGAGTA
TACGGCTGCTCTACGAACGATTTGTGGAGCAACTTCGCCTGCCATTGGCC
GCGGATGAAATGGCCGACGAGGAGGACAATAACGCCTCGGTGACTGATGG
CTCAGCCCGTTTCGAGGACAAGAAGCTGCATATGCTGGCCCAGTACATTC
GGGCGGAGGAGGTGAGTCCGTCGCTTGTGGAGCAACTGTACCGTCTGGAG
TCTGAGAAGCAGCTGTCCTCTGTGTACGTTGTGGGCTTCACCTATGCCGG
CTTGCTCGCTGGCAACACCACAGACGATGTGCTGCGGCAATATGCCGCCA
ATCTTACATTGCTGGTGGCTCCGTTTCATCGCCTGGTGGCGCAAACTTCG
CGGGTCCTCTGGAAGCTAGCAGACCGCGTGGACGAGGAGAAATTGCCCGC
GCACTGGAAGCTGCTCCAGAACGAGCAAATCGATCGATTAAACCATGTGG
GCCAGAGGAGTTTTTCGCTACACGGAGGCAAGCGTTTGGGATCCGCCTGG
CACATAGCCAATGGTTTGCTGGACACGCCATCGATGGTCATCAGCTGCGC
GCCAATGGCCAGCGACTGAGTTCAGCTACTGTGACATGTACTGCATGACT
ACATGACTACATGATGGCACTGGCTGCAGCAGTTCTGACCATACACCACG
CTGCAAAATGCCAAGCCTGTTGCGTCCGTACGGCCTTGTGG
FMO08404.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2938-RD | 3775 | CG2938-RD | 231..1338 | 9..1107 | 5205 | 98.6 | Plus |
| CG2938-RC | 3759 | CG2938-RC | 371..1478 | 9..1107 | 5205 | 98.6 | Plus |
| CG2938-RB | 3619 | CG2938-RB | 231..1338 | 9..1107 | 5205 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3934437..3935179 | 1107..374 | 3150 | 97.7 | Minus |
| X | 23542271 | X | 3935729..3935997 | 277..9 | 1345 | 100 | Minus |
| X | 23542271 | X | 3935260..3935357 | 373..276 | 490 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 30..64 | 1010..976 | 121 | 82.9 | Minus |
FMO08404.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:50 Download gff for
FMO08404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-RB | 255..1370 | 9..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:46 Download gff for
FMO08404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-RB | 231..1346 | 9..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:38 Download gff for
FMO08404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-RB | 231..1346 | 9..1113 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:38 Download gff for
FMO08404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3934429..3935179 | 374..1113 | 97 | <- | Minus |
| X | 3935260..3935356 | 277..373 | 100 | <- | Minus |
| X | 3935730..3935997 | 9..276 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:46 Download gff for
FMO08404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3828462..3829212 | 374..1113 | 97 | <- | Minus |
| arm_X | 3829293..3829389 | 277..373 | 100 | <- | Minus |
| arm_X | 3829763..3830030 | 9..276 | 100 | | Minus |
