FMO08406.5prime Sequence
1099 bp (1015 high quality bases) assembled on 2010-06-07
> FMO08406.5prime
CAGTCGACATGCGTGAAGCCCTTTTTTCCCAAGATGGCTGGGGCTGTCAG
CATGTTAACCAGGATACTAATTGGGAAGTTCCCAGTTCGCCAGAACCAGC
CAATAAGGATGCACCCGGTCCACCAATGTGGAAGCCAAGCATTAACAATG
GTACTGATCTTTGGGAGTCCAATTTGAGAAACGGAGGTCAGCCGGCCGCA
CAGCAAGTTCCAAAGCCGTCGTGGGGTCATACACCATCCTCTAACTTAGG
TGGAACATGGGGTGAGGACGACGATGGCGCCGATAGTAGTAGTGTGTGGA
CTGGAGGAGCTGTTAGCAACGCGGGATCCGGAGCTGCAGTGGGAGTAAAC
CAAGCCGGAGTTAATGTCGGTCCAGGCGGTGTTGTTTCGTCTGGCGGACC
TCAGTGGGGACAAGGTGTCGTTGGCGTCGGACTTGGATCAACTGGAGGTA
ACGGGTCAAGCAATATAACTGGATCGCCTGGAGTCGCAACAGGTAGTAGC
GGAAACTCCAGCAACGCTGGTAACGGTTGGGGAGACCCTCGTGAAATACG
CCCTTTGGGAGTTGGTGGCTCCATGGATATTCGAAATGTTGAACATCGCG
GCGGTAACGGTTCTGGAGCAACTTCGAGCGATCCACGAGACATTCGCATG
ATCGATCCGCGTGACCCTATTCGAGGAGATCCCCGTGGAATATCTGGTCG
TCTTAATGGGACCTCTGAAATGTGGGGTCATCATCCACAAATGTCCCATA
ACCAGTTGCAAGGTATCAACAAAATGGTTGGTCAAAGTGTAGCAACTGCC
AGCACCAGTGTCGGAACATCTGGCTCGGGCATCGGTCCTGGAGGTCCCGG
TCCTAGTACAGTATCATGCAATATCCCAACACAGTGGGGGCCTGCTCAAC
CGGTAAGCGTTGGTGTAAGTGTCCCAAAGACATGTCAAACAGATAGTGGA
TGGGAGGAACCATCACCACGCCTCAGCGTCCCAGTATTCCTAACTACGAT
GATGTACATCGTTGTGCGTAGCAACTTCGTGTTCCCGCTGCAGTGGTCCA
GGAAAGACATGACTGTATCCATGGTCCGTCATCTTCCATGCGTCCCCAG
FMO08406.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gw-RJ | 4786 | CG31992-RJ | 352..1417 | 9..1065 | 4985 | 98.4 | Plus |
| gw-RI | 6807 | CG31992-RI | 1446..2511 | 9..1065 | 4985 | 98.4 | Plus |
| gw-RA | 5036 | CG31992-RA | 596..1661 | 9..1065 | 4985 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 657080..657685 | 1042..444 | 2610 | 97.7 | Minus |
| 4 | 1348131 | 4 | 657901..658337 | 445..9 | 2185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:42:00 has no hits.
FMO08406.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:47 Download gff for
FMO08406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gw-RH | 181..1267 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:12 Download gff for
FMO08406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gw-RA | 589..1675 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:22 Download gff for
FMO08406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gw-RA | 589..1675 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:22 Download gff for
FMO08406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 657041..657684 | 445..1079 | 96 | <- | Minus |
| 4 | 657902..658343 | 1..444 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:12 Download gff for
FMO08406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 677667..678310 | 445..1079 | 96 | <- | Minus |
| arm_4 | 678528..678969 | 1..444 | 99 | | Minus |
