FMO08407.5prime Sequence
1158 bp (1025 high quality bases) assembled on 2010-06-07
> FMO08407.5prime
CAGTCGACATGATTATGCGACGGGCCAGTGCCTGCACAATGCCATCGAGT
GGCGGAGGAGGAGGAGCAGGTGTTGGTAGTTCCCAGAGAGAGGAGGCCAC
CACACCGGGTGAATCGCCCGGAGGACGCCTGTCCCGCTGGTTTTCCATCA
GGCGCGGCTCATCGCACCAGTATGACGTTGGAGGACGCGATGGACGCCAC
TCGACCGCCTCCAGTTTCGATACGCCCGATTCGGGTTCGGGAAATTCACC
GAAAAACGGATCCAATGCGGTCGCTGGAACCGGGGGAGCAGGATCCCAAG
GAGTAGCGCTGGACGCAGCTTCACCACAGAAATTGGCCAATTTGGGAGCC
AGCAAAATGATGCCCGGAGTGCCAGAGTCGGAGGATGACGAGGCGACTGC
CAATCGCTTCGATGTGGACCTTATGATGACGCCTGGCAGTCGGGCCAATG
GAACTGCTCGAACCGCCCACAACCGGCTGATTGTACCCATGTTGCCGCCC
GCCCCCGCAGGACTGTCCCAGCAACAGCTGAAGAGGCGCCACATTGTGGC
AGCCATTGTGCACAGTGAGAACTCGTATGTGGCCACCCTGCAGCGACTAG
TCAATGATTACAAGAAACCGCTGGAGGAGTGCAGCCCGCCAGTCCTGAAT
CCGGTGAAGATAGCCACCCTGTTCCATTGCCTGCCGGACATCTTGCACTC
GCACAAGTTGTTCCGGATCTCGTTGGCGGAGTGCGTCCGGAACTGGGATC
GCGATGAGAAGATCGGCGATTGCTTTGTGAGCGCGTTTGGAAAGCCGCAG
CTACTAGAGATTTACTCCGGTTTCATCAACAACTTCTCGGCGGCCATGGA
GCTGGCCAAGATGGAGGAAAAGCGCAAATCGGCACTGGCCGATTTTCTTT
AAGTCAAGCAGATCAGTGCCCACGATCGGTTGTCGTTTTTCGGACTGATG
GTGAGCCGGTGCAGCGTTTCCCCCAGTTCATCCTCTTTCTGCAGGTCTTG
CTGAAATACACGCCACAGGCACACGACGGATGTTCGCTGCAGTTGTCCTT
GTTCGCAGCTGAACTTCTGCGTGACTTCTTCACGAAGCAACCGTAGGCGG
GAGCATACAGGCTTTAAGGAATGTCTGGCCAATTCTCGGCACCTTCATGT
CCGATCCT
FMO08407.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43658-RF | 7067 | CG43658-RF | 1025..2187 | 7..1157 | 5000 | 96.5 | Plus |
| CG43658-RH | 7346 | CG43658-RH | 1304..2466 | 7..1157 | 5000 | 96.5 | Plus |
| CG43658-RG | 7249 | CG43658-RG | 1207..2369 | 7..1157 | 5000 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17461709..17462123 | 1019..606 | 1875 | 97.3 | Minus |
| X | 23542271 | X | 17463876..17464246 | 377..7 | 1855 | 100 | Minus |
| X | 23542271 | X | 17463592..17463822 | 606..376 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:20:45 has no hits.
FMO08407.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:45 Download gff for
FMO08407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8557-RC | 776..1848 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:28:48 Download gff for
FMO08407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43658-RG | 1201..2273 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:33 Download gff for
FMO08407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43658-RG | 1201..2273 | 1..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:33 Download gff for
FMO08407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17461684..17462123 | 606..1041 | 96 | <- | Minus |
| X | 17463593..17463820 | 378..605 | 100 | <- | Minus |
| X | 17463876..17464250 | 1..377 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:28:48 Download gff for
FMO08407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17355717..17356156 | 606..1041 | 96 | <- | Minus |
| arm_X | 17357626..17357853 | 378..605 | 100 | <- | Minus |
| arm_X | 17357909..17358283 | 1..377 | 99 | | Minus |
