FMO08408.5prime Sequence
1086 bp (995 high quality bases) assembled on 2010-06-07
> FMO08408.5prime
CAGTCGACATGCGTAGGAGGCGTGGCACGCCCCTGGGCGTCAGCTGGACG
AACTGCGTCCTGCTCCTGGCCACCGGTCTGCTGGTGGTGCTCATTTCGGT
GCACGCCAAGAACCCCAGGCCGCATCGAGGACTACCCGCCCCGGCTCCTG
CACCAGTTCCTGCATCCGTAGATCAGGTGGCAACTGAAAATGCCCACAGG
CGGGAACCTACCGTCGATGGGAGTGTACTTCAACGGCTATCGGGTTCAGA
TAGGGCTGTTGACGAGGATGAGGATGTCGATGAGGATGAGGATGAGGGGC
TAAAGCACCAGCACCTCGAGCATCGGCAACAATTTGACGCATATCTGGGC
ACAATCCGACGGCTGCGTCGTCCATACCGCAGCAAATACACCATCGAGCA
GCTGATGCGACTGCATGTGACACCAAAGGTATCCGGAGACATTGACATGG
ATCCCTGCAAGGCGGGCGGTTTCATGGGCGACATTGCCCTGCCGGAGGGT
GATTCCGGCCCGGTGGTTGCCCACACGCCCATCGACGACGAGGAGCAGGA
GCGCCAGGAGGTGGAGCAGCTGCTGGCTGACTCGCCCAGCCCGGTTCACG
ACCCCCCTTCCGTTTCCGGTGCGGCCAACTCAGGGCCGACCAAGTTCAAT
GCCACCTTCCAGCTGGATCTGGAGAAGCTCAAGCAGGAGGTCTACCACGA
GGGCCTACAGGTGGAGGAGGAGGGCCTCACCGACATCATCCGCAAGAAAG
ACCAAGCTGCCCAGCTCTGTCCGGTCAACCTGAAAGCAGGACAAAGCCAG
TCACAGAGTCAGAGTGCCAATGAACCCGTGAAGCCCGGTTCGGAATCGCC
CTCCGATTACGCGCAGCATCCAGCTACTAGGATTGATGTACTGCCTCCGT
CGGAGCAGCGAATCCATACGGACAGCCGGCACGGTTGACGCTGGCCGAGA
TTGGACCCTAGTTCAGCACAGACGCAGTCGCTGCACCGTAATTGTGAACA
CGCCAGATCAGTCGGACTACAGTACTTCGAGACGATTCGGCACATTGTGG
CCGAAGGAGCGCCACGATTGGCCACTTCTTGCCGGA
FMO08408.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tok-RC | 5364 | CG6863-RC | 325..1421 | 9..1086 | 4740 | 96.7 | Plus |
| tok-RA | 5368 | CG6863-RA | 329..1425 | 9..1086 | 4740 | 96.7 | Plus |
| tok-RB | 5247 | CG6863-RB | 208..1304 | 9..1086 | 4740 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24727870..24728327 | 9..466 | 2290 | 100 | Plus |
| 3R | 32079331 | 3R | 24742610..24742957 | 465..812 | 1615 | 98.9 | Plus |
| 3R | 32079331 | 3R | 24743159..24743345 | 809..992 | 650 | 94.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:59:53 has no hits.
FMO08408.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:44 Download gff for
FMO08408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tok-RA | 323..1343 | 1..1017 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:09 Download gff for
FMO08408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tok-RB | 201..1221 | 1..1017 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:14 Download gff for
FMO08408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tok-RB | 201..1221 | 1..1017 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:14 Download gff for
FMO08408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24727863..24728326 | 1..465 | 99 | -> | Plus |
| 3R | 24742611..24742957 | 466..812 | 98 | -> | Plus |
| 3R | 24743163..24743372 | 813..1017 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:09 Download gff for
FMO08408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20553585..20554048 | 1..465 | 99 | -> | Plus |
| arm_3R | 20568333..20568679 | 466..812 | 98 | -> | Plus |
| arm_3R | 20568885..20569094 | 813..1017 | 93 | | Plus |
