FMO08409.5prime Sequence
1120 bp (1019 high quality bases) assembled on 2010-06-07
> FMO08409.5prime
CAGTCGACATGGAAACTGGACCGAATGCAGAAATTGAGCTTCTGGAGCGC
GTCCTGTTGCGTCTGGGAAATGCGGACTCGGATGAGAAGCTGGAAGCCGC
TGTGGGCAAGTTCCTGACCCCGGTGATCCTCAAAATGAACTCGCCCCACA
ATGTGGTGCGCACAAAGGTCGTAGAAGTGCTCACCCATATCAAGAGGCGC
CTGTCGTCGCGCGGACATGTGCAAATACCCGTAGAGGCACTGCTGGATCA
GTATGCCGCCCAGGATAGCAGCACCTTCCTCAAGAACTTCGCCATCATAT
TCATTACCATGGGCTTTCCGCGCCTGGCGTTGGAACAACAGACTGCGCTG
GCCAGCAAAGTGGTGGGCTGCGAGGACAAGCTGGAGAGCTACCAGGACAA
GCTGTTCGCCCTGCTGCTGCCCGTACTGTCGGACATGAAGATTCCCGACG
ACCCGACGCAGCGCTCAAAGCTACTTGATCTGCAGGACAAGCCAGCCATC
TGTGCAAACTTTTTGGCACTGCTCCAGGATGTGCTCCTCCTGCCCTATGG
CATCACCCAGGAACAGGATGTGCCTCCGGGTCTGAGCCCGTACAGTTTTA
CACGCATCATCGCCTACAATTGGCGGGCCGAAGAACTGGAAAAGGTCAAG
AAGGGAATAGTTCGTTTCCTGTGCGCCAGTGTGTTTAGTGATTTGCAGAT
ATTCGTGCCACTGGTGGTGGCTTCCGCGGACACACGTTTCAGCGTAGCCA
CTCCAGCAATCACAGAGCTGAGCAAGCTCTGTACAATGCTGGATTTCAGC
AACCCAGCGGTGACTGCCCCGTTGTACACTCTGTTCGCTGGCAACCAAAG
CAAGATAACTGACCGCCAGACACGTCCCTGCTGCGCCCGAGTGCGCCAAA
AATTGCTGCAGTACCTCATCAAGTGCCGTGCAAAAGCATTAACGTCACCA
AGGGCTTGCAGTGACCTTTGATGGCTTCTTTGGCACAAACACAACCAGAA
GTGCAAGTCCTAGCGCTACAGTTTTGGACTGCTCCCTCAAGAGAATGGTC
CCCGCGAGCTGTCCTCGAGTTCAAGTATACTACGGCATCACCAAATCATG
GACGGACTCCCACGACGAAG
FMO08409.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8858-RA | 5896 | CG8858-RA | 25..1145 | 9..1115 | 5095 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12197580..12198442 | 1024..166 | 4115 | 99.5 | Minus |
| 2R | 25286936 | 2R | 12198546..12198678 | 168..36 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:10:05 has no hits.
FMO08409.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:37 Download gff for
FMO08409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8858-RA | 9..1129 | 9..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:19 Download gff for
FMO08409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8858-RA | 25..1145 | 9..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:01 Download gff for
FMO08409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8858-RA | 25..1145 | 9..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:01 Download gff for
FMO08409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12197556..12198440 | 168..1045 | 98 | <- | Minus |
| 2R | 12198547..12198677 | 37..167 | 100 | <- | Minus |
| 2R | 12198803..12198830 | 9..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:19 Download gff for
FMO08409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8085061..8085945 | 168..1045 | 98 | <- | Minus |
| arm_2R | 8086052..8086182 | 37..167 | 100 | <- | Minus |
| arm_2R | 8086308..8086335 | 9..36 | 100 | | Minus |
