FMO08411.5prime Sequence
1119 bp (1018 high quality bases) assembled on 2010-06-07
> FMO08411.5prime
CAGTCGACATGATGTGGCACTTGCTGCGCGCCCTGCTCGTGGTAGCCGCC
GTCTTGGATGCACTGCAACCGGCGGTCGGACAAAACGACAACTACTACAA
CCCCAACCAGAACCAGCAGAATCCCCAGCAGCCGCTACTGCCCAACCAGC
AGTGGGGTAACAATCCACAGACGAATCAGTATAGCAACAACAACCAAAAC
TTTGGCCAAACGAATCCCAGTGATCGCCCGCCGTACAGGACCGATTCGGG
GAGCTACAACGATATTGCCGGGCAAGATGACTATAATAAACGAGTGGGAG
GAGGCTATCAGGACAACGAGGAGCCGAGTCTGACTCGTGGAAAGTCGTCC
TATAACATCAAGGCCACCTTCCTGGAATCGCTGCATTCCAGGGAGCCCAC
TTACTTCATTGTGGCATCTCGAATGGTCAGACCTGGTCTAATCTATCAGG
TGTCCGTATCCATTCTTCAAGCTCAGTACCCGATAACCGTTCATGCCAGC
ATCGCGTGCGATGGTGTCCAAATCAGCGGAGACTCTAAGGATGTCAAGGA
GGGCATACCGGAGACGTTGCTCATGAGGATCCCACCAACTAGTGTGACTG
GAAGCTATAAGCTTCGAGTGGAAGGTTTCTACCAGAACGTTTTCGGTGGC
CTCGCCTTCCTGAACGAAACAAGACTAGACTTCTCACAGCGCTCCATGAC
GATATTTGTGCAGACCGATAAGCCTCTTTATATGCAAGGGGAAACTGTGC
GATTTAGGACCATTCCGATCACCACCGAACTGAAAGGGATTTGACAATCC
CGTCGATGTGTACATGCTGGATCCAAACAGGCATATTCTTAAACGTTGGC
TATCGCGTCAATCAAACTTGGGTTCCGTTTCGCTGGAGTACAAACTTTCG
GATCAGCCCACTTTTGGAGAATGGACTATCCGTGTAATAGCTCAGGACAG
CAAGAGAGAGTCACTTCACCGTGAGATACTATCAGACCGATCGAAGTGAA
TGTTACCATGCTGCGTACTTCTCACACGATCGTTATCTTACGAAGGTGAT
GCTACTTACAGTGGCTAACAGTAGAAGCCATCTCCAATCAGCACGATCGC
CAATTGAATCTCAGCACAG
FMO08411.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mcr-RA | 6296 | CG7586-RA | 175..1195 | 9..1022 | 4895 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8079763..8080610 | 857..9 | 4195 | 99.9 | Minus |
| 2L | 23513712 | 2L | 8079495..8079668 | 1022..857 | 515 | 93.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:20:50 has no hits.
FMO08411.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:55 Download gff for
FMO08411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcr-RA | 150..1198 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:34 Download gff for
FMO08411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcr-RA | 163..1211 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:32 Download gff for
FMO08411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcr-RA | 163..1211 | 1..1034 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:32 Download gff for
FMO08411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8079479..8079667 | 858..1034 | 93 | <- | Minus |
| 2L | 8079763..8080615 | 1..857 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:34 Download gff for
FMO08411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8079479..8079667 | 858..1034 | 93 | <- | Minus |
| arm_2L | 8079763..8080615 | 1..857 | 99 | | Minus |
