FMO08412.5prime Sequence
1146 bp (996 high quality bases) assembled on 2010-06-07
> FMO08412.5prime
CAGTCGACATGGCTCCGCGTCGCAACAGCAACATCAGCAGCAGCGGCAAC
AGCACCCAGCAGCAGCACCAGCAACAGTTGCAGCAGCAGCACCAGACGCA
GCAGCATCAACTGCTGCAGTTCTACGCGGAGAACGTGAATTCTTCAGGCG
TCCTAATGGCGCCCATGCAGGGAACCGGTGGCGTTGGCGGCGTTGGCGGC
GGGGGCATGGTCCACTGCTGCCTGCCCAGCGGAGACTGTCGCAAACTGGA
CACCCTGATACACCTGAACGAGCTCTCCCTGGCGGACTGCATCCGTGTGC
TGTGCAACAACGAGAACTGCAGCGCAGGCCAGTACATGCATCGCGAGTGC
TTCGAGTGGTGGGAGGCGAGCGTGCTGCAGGCACTGAAGGCCAACGGTCG
TGCTCGATCCTGGTCGGAGCGGCAGCGTCTGCAGCACCTGTGGACCAAGA
AGGGCTACGAGCTGGTCCAGAAGGCCTGCAGCTGCAAGTGCGGCAGGGGA
CAATTGCGCAAGGACCTCGACTGGGTGCCGCCGAGCAGCCAGGGCGTCAT
ATACCTCAACGGGTCTGGCAACCGGCCCACTCTGGCCAATGGCAGCCTCA
GCGAGGACGACGACAAGAAGAAGGCCAAGAAGAAGAGGAACCGCAACAAC
AACAACAACAACGGCGGCGGCGGTGGTGGTGGTGCTGGTGTCAATGGCAA
CACCAAAACCCCCTTGAGCAACAACAACGGCAACAGCTACGCCGGACTCA
CGCCCAATCCCAATGTGGGCGTCATAGGGTCGGGTTTGCCCCACAACAAC
GGCAACACCGCCAGCAATGGCAGCAGTGGCAACAACGGCTCCTCCGGCGT
TCTGCAGACCAGTGCGCTGGGCCACTTTCAGCAACATCCTCAATACGAAC
CAATGTCCTCGGCCTGGACCTGCGCGCCAGGCTGGCAGCCTATCCTCCAG
TGGAGCTGCAGTGATCCACTCGCCCTCGGACTCCCAGTCCAGTGCGAGAT
TTCCGTGTCGCCGTGCAGCAATTGCTGCCACAGCCAGCAGCAGCAACAGC
AGCAGTTCGCCTGCTGATTCAGCCTCTTGGATCAGCCATTCGCAGGCAAC
TTTGGCCAATTGATTGGACTGGTCAGAATTCGTGCTGAATTGCTCC
FMO08412.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hdc-RD | 14807 | CG15532-RD | 1013..2082 | 9..1077 | 5070 | 98.8 | Plus |
| hdc-RC | 4518 | CG15532-RC | 1013..2082 | 9..1077 | 5070 | 98.8 | Plus |
| hdc-RA | 4518 | CG15532-RA | 1013..2082 | 9..1077 | 5070 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30278944..30279994 | 9..1056 | 4805 | 99.1 | Plus |
Blast to na_te.dros performed 2014-11-28 20:19:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2535 | 612..848 | 172 | 54 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2487 | 633..740 | 153 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2508 | 639..839 | 151 | 55 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1048..1169 | 618..743 | 143 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..2988 | 698..900 | 132 | 55.9 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 504..552 | 692..740 | 119 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2989 | 593..834 | 116 | 54.9 | Plus |
FMO08412.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:54 Download gff for
FMO08412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hdc-RC | 1011..2089 | 9..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:16 Download gff for
FMO08412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hdc-RA | 1013..2091 | 9..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:47 Download gff for
FMO08412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hdc-RA | 1013..2091 | 9..1086 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:47 Download gff for
FMO08412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30278944..30280035 | 9..1100 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:16 Download gff for
FMO08412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26104666..26105757 | 9..1100 | 98 | <- | Plus |
