FMO08413.5prime Sequence
1078 bp (874 high quality bases) assembled on 2010-06-07
> FMO08413.5prime
CAGTCGACATGGACGACACACAGCACTTCTGCCTGCGCTGGAACAACTAC
CAGAGCAGCATAACCTCGGCGTTCGAGAATCTGCGCGACGACGAGGCCTT
CGTGGATGTGACCCTCGCCTGCGAGGGACGCAGCATCAAGGCACACCGCG
TCGTCCTCTCCGCCTGCAGTCCCTACTTCCGCGAGCTGCTCAAGAGCACA
CCCTGCAAACACCCGGTCATACTGCTGCAGGATGTCAACTTCATGGACCT
GCACGCCCTGGTGGAGTTCATCTACCACGGCGAGGTCAACGTGCACCAGA
AGTCCCTGCAGTCCTTCCTTAAGACCGCCGAAGTGCTGCGCGTCTCTGGA
CTCACGCAGCAGCAGGCAGAGGACACACACAGCCATCTGGCTCAGATACA
GAACCTGGCCAATTCCGGCGGCCGCACGCCGCTCAACACGCACACCCAAT
CGCTCCCACATCCGCACCATGGCTCGCTACACGACGACGGCGGCTCCTCG
ACCCTCTTCAGCCGCCAGGGAGCGGGTTCGCCACCGCCGACGGCGGTGCC
ATCGCTGCCCTCGCACATCAACAACCAGCTGCTGAAGCGCATGGCCATGA
TGCACCGCAGCAGTGCCGCCGCCGCCGCCGAGGAGACCTCCTACGCCTTT
AAGCGTCTGCGCGGCTCGGACAACAGCCTGCCGCTGTCCGGCGCCGTTTG
GCAGTGGCAGCAACAACAACAGCCCCGACTTTGCCCGCCGCTTTCATGCG
CGCAGCGCCTCGCCCCAGCAGACTTCCGGCCGACTTCAGTACGATCAGCA
CCCACAACAACAACAACACGCCGCCGCTGAAAGGAGGAGAAGCGCACCGG
ACCCATATGCAACGTAAACTCTGGCAACTGCAATGGCAATGCGCACCGGA
GCGAGCAACGGCAACGGAATCTCCATCAGCGACGAGCTGGGCCAGCCTCA
CCCCTCTCCTCTTGGCTCTAGCGGCGCCGAATGATGTCTAAGCGGAGCCC
ATGTACATGGTCTTCTCTAACACTGTGCCAATGCCAACGTCGATACAGCA
ACGACTCTCACCTGGTAGCCGATGCCTA
FMO08413.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| br-RO | 4368 | CG11491-RO | 975..2041 | 4..1076 | 4570 | 96.1 | Plus |
| br-RN | 4546 | CG11491-RN | 970..2036 | 4..1076 | 4570 | 96.1 | Plus |
| br-RM | 4213 | CG11491-RM | 637..1703 | 4..1076 | 4570 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1636096..1636550 | 384..844 | 1950 | 97.4 | Plus |
| X | 23542271 | X | 1635830..1636020 | 193..383 | 955 | 100 | Plus |
| X | 23542271 | X | 1624517..1624707 | 4..194 | 940 | 99.5 | Plus |
| X | 23542271 | X | 1636639..1636852 | 844..1057 | 445 | 84.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:18:57 has no hits.
FMO08413.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:36 Download gff for
FMO08413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RB | 841..1909 | 1..1076 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:14 Download gff for
FMO08413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RM | 635..1703 | 1..1076 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:43 Download gff for
FMO08413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RM | 635..1703 | 1..1076 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:43 Download gff for
FMO08413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1624515..1624707 | 1..194 | 98 | -> | Plus |
| X | 1635832..1636020 | 195..383 | 100 | -> | Plus |
| X | 1636096..1636549 | 384..843 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:14 Download gff for
FMO08413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1530129..1530582 | 384..843 | 98 | -> | Plus |
| arm_X | 1518548..1518740 | 1..194 | 98 | -> | Plus |
| arm_X | 1529865..1530053 | 195..383 | 100 | -> | Plus |
