FMO08415.5prime Sequence
1119 bp (992 high quality bases) assembled on 2010-06-07
> FMO08415.5prime
CAGTCGACATGCTGCGAATTGATAAAATACTTGTGGTTTCGCGTGGGAAG
GCGAGTTCCGTTGAAGTCGCAGCACTGCGTTACATAGCTGCATCTATTGC
TACAGCCACGTTGGATTCTCAATCCCAAATAAAGGCGGTCTCCAGTCCAA
CGCTGTCCGAGCCGTGCTTAGAGGAGCAGCCACAAAAAGGAACTGAAAGT
ACGGATGTGGCCAACACAGGCAGCAGCGCCGGAAGTGGAGGCCTAGGCGT
ATTGCAGAAATTCAAACGCACCTTGAACAACTTTAACAACAAAAATCAAT
TGCACATCTCTCCGCTATCACCAGCGGCAGTAGCACCTATGATAACGACG
ACCACAGCTAGCGATCCTGGCTCAGAGGCCGGCGATACGAGCTCCGGAAA
ATACCGGTTTGGGCCCCTTATTTGGCGTTCTTCCAAAGAACGCCGTAAGA
CGAAGTACAACCGACGCGACAAGTGTAATTCTGGTGATTCAGGCATACAG
ATCGAACTAGAACAGGATGAGCAATACTCCCGTGCGACAATGGCCGTGAG
CCGCCAGGATGAGCCCCGCGCTTTTGCGTTAACCAATGGATCGTGTGGTG
TCGCGCTCTCTAAAATGCGAGCCATACGTCGCACCAACTCTGCAAAGGCG
AGCAGCATCCTTGGGCCCTTTATCGTTAAAACCAAAATAGCCAAGCACTT
AAACATTGGAGAGTCTGACAAAGCCGAGCGCAAAGCGCCCGAGTCTCTAC
CCACGCGATCGCTTAGCCAACCGAACGGCCTAGAGTCCTACGGTATGGGT
CGTCCCGATCTTGAGGATAGCGACAGCGATAGTGTCGCGTCAACGAGGAA
GCTATAAGCTTCTACCCAACTACCTATGCGGAGGTGCTTTACAACTTCAC
GGCCGGCGTCCTCAGAAACTACGGCTAGAGAGAGGAATGCTTATTGATAT
ACTGCGCAAGGAGTTGACCCTGTGTTCGGCCGATTAAGAAAGAGGAACCA
TCTGTGAAAACTATTTGGGTCCTGAGCTGGGCTGTTCCAAGTAGTTTGTG
CCGATTATCCTGTCAAAGACGACATTCCTTAATCGCACAGTCCTGCTCAT
GATAGCGGCGCTGAAGAGC
FMO08415.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF3-RE | 3168 | CG43976-RE | 163..1226 | 9..1058 | 4755 | 97.4 | Plus |
| RhoGEF3-RB | 3086 | CG43976-RB | 163..1232 | 9..1058 | 4685 | 96.8 | Plus |
| RhoGEF3-RK | 3157 | CG43976-RK | 150..1215 | 9..1058 | 4615 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 301160..301672 | 331..843 | 2535 | 99.6 | Plus |
| 3L | 28110227 | 3L | 300901..301108 | 126..333 | 1040 | 100 | Plus |
| 3L | 28110227 | 3L | 300732..300848 | 9..125 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 301756..301869 | 850..962 | 445 | 94.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:19:38 has no hits.
FMO08415.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:33 Download gff for
FMO08415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RE | 163..1118 | 9..962 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:04:20 Download gff for
FMO08415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RE | 163..1118 | 9..962 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:11 Download gff for
FMO08415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RE | 163..1118 | 9..962 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:11 Download gff for
FMO08415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 301758..301869 | 852..962 | 94 | == | Plus |
| 3L | 300732..300848 | 9..125 | 100 | -> | Plus |
| 3L | 300901..301108 | 126..333 | 100 | -> | Plus |
| 3L | 301163..301681 | 334..851 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:04:20 Download gff for
FMO08415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 300732..300848 | 9..125 | 100 | -> | Plus |
| arm_3L | 300901..301108 | 126..333 | 100 | -> | Plus |
| arm_3L | 301163..301681 | 334..851 | 99 | -> | Plus |
| arm_3L | 301758..301869 | 852..962 | 94 | == | Plus |
