Clone FMO08417 Report

Search the DGRC for FMO08417

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:84
Well:17
Vector:pMK33-CFH-BD
Associated Gene/TranscriptFs(2)Ket-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08417.5prime Sequence

1156 bp (1056 high quality bases) assembled on 2010-06-07

> FMO08417.5prime
CAGTCGACATGACTTCCGATATCGCCATGCAATTGATTGCCATTTTGGAA
AAGACGGTGTCGCCAGACAAAAATGAGCTGCTATCGGCGAAGAACTTTCT
GGAGCAGGCGGCGGCCAGCAACCTGCCCGAGTTTCTCAAGGCGCTGTCAG
AGATACTGGTGAACACGGCCAACAGTGCGGTGGCGCGAATGGCAGCCGGT
CTCCAGCTGAAGAACCACCTGACCAGCAAGGACGAGAAGGTCAGCCAACA
GTACCAGGACCGCTGGCATCAGTTTCCCAGCGAGATCCGCGAGTTGATCA
AGAATAACATCCTGGCTGCTTTGGGTACCGAGAACACCCGACCCTCCTGC
GCCGCCCAGTGCGTGGCCTATGTGGCCGTGATTGAGCTGCCGATAAACCG
CTGGCCCATGCTCATCCAGACACTGGTGAACAAGGTGGTCAGCGAAGGAT
CCAGCGAGATGCATCGCGAGTCGGCGCTGGAGGCCATTGGCTACATTTGC
CAGGACATTCGTTTCGGCGTCATGGAGAACCAGTCGAACGATGTGCTGAC
TGCTATTATTCACGGCATGAGAAAGGTAGAGCCGAGCAATCATGTACGCT
TGGCGGCCACCACGGCCCTTCACAACTCGTTGGAGTTCACCAAATCGAAC
TTTGAGAAGGACATGGAGCGCAACTTCATCATGGAGGTGGTGTGCGAGGC
CACTCAGTGCCAGGACTCGCAAATCTGCGTTGCCGCTCTGCAGTGCCTGG
TGAAGATTATGACCCTTTATTACCAGTACATGGAGCCCTACATGGCACAG
GCTCTTTTCCCTATCACTTTGGCGGCCATGAAGTCTGATAACGATGCTGT
AGCGCTGCAGGGCATAGAGTTCTGGTCGAACGTCTGCGATGAGGAGATAG
ATCTGGCCATCGAAAGCCAGGAGGCCACTGATCAGGCCGCGCTCCGCAGA
GAGTGTCCAAGCACTATGCTCGAGGTGCTCTGCAGTTCCTGACGCCTGGT
GCTCGTCGAGAAATTACCAGCAGGCCGAGTGGCGATGACGAGACACTTGG
AGCCCGGCGAAGGCCGCCTCGGTTGGCCTTATGGTGCTGGCCACATGGTT
GGCAAGACAGAATCGTGTCCATGTTGCTTCCCTTTCATCAAGAAATACTC
AGATCA

FMO08417.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
Fs(2)Ket-RE 4699 CG2637-RE 298..1434 6..1142 5235 97.9 Plus
Fs(2)Ket-RC 5571 CG2637-RC 298..1434 6..1142 5235 97.9 Plus
Fs(2)Ket-RB 3783 CG2637-RB 480..1616 6..1142 5235 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20736418..20737208 309..1097 3580 98.2 Plus
2L 23513712 2L 20736100..20736344 64..308 1210 99.6 Plus
2L 23513712 2L 20735370..20735430 6..66 305 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:10:27 has no hits.

FMO08417.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:31 Download gff for FMO08417.5prime
Subject Subject Range Query Range Percent Splice Strand
Fs(2)Ket-RA 290..1399 1..1111 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:14 Download gff for FMO08417.5prime
Subject Subject Range Query Range Percent Splice Strand
Fs(2)Ket-RB 476..1585 1..1111 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:09 Download gff for FMO08417.5prime
Subject Subject Range Query Range Percent Splice Strand
Fs(2)Ket-RB 476..1585 1..1111 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:09 Download gff for FMO08417.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20736103..20736344 67..308 99 -> Plus
2L 20735366..20735430 1..66 95 -> Plus
2L 20736418..20737220 309..1111 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:14 Download gff for FMO08417.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20735366..20735430 1..66 95 -> Plus
arm_2L 20736103..20736344 67..308 99 -> Plus
arm_2L 20736418..20737220 309..1111 97   Plus