FMO08419.5prime Sequence
1112 bp (1036 high quality bases) assembled on 2010-06-07
> FMO08419.5prime
CAGTCGACATGGAAGGCTCAGACTTTGTGGATCCAGCCTTTTCTTCAGGA
GAACGAATATCGGCATCTGATCTCAATTCGGAGCATATTATTCAGGCCGA
GAATCACAGTTTTGCTAATCGAATTTCTATGGATATGGATGTCCCTGATG
GGCACCAGCTGGACAGCAACTTAACCGGATTTCGATGGAAGCGAGTTCTT
AACCCAACCGGACCGCAGCCCCGCCCGAGACATGGACACCGTGCGATAAA
CATCAAAGAGCTAATGGTCGTCTTCGGCGGCGGAAACGAAGGAATTGTTG
ACGAGTTGCACGTTTATAATACTGTTACTAATCAGTGGTACGTCCCAGTG
CTAAAAGGTGATGTACCGAACGGATGCGCTGCTTATGGATTTGTTGTGGA
GGGTACTCGCATGTTTGTTTTTGGGGGAATGATCGAATACGGAAAATATT
CAAACGAGCTCTATGAGCTACAGGCAACTAAATGGGAATGGAGAAAAATG
TATCCAGAGTCACCAGACAGTGGGTTGTCACCGTGTCCTCGCTTGGGTCA
CAGCTTTACAATGGTTGGTGAAAAAATATTTCTTTTCGGCGGACTAGCAA
ATGAATCGGACGACCCAAAAAATAATATTCCAAAATACTTAAACGACTTG
TACATACTGGATACTCGAGGAGTTCACAGTCATAACGGAAAGTGGATAGT
ACCTAAAACATATGGGGATAGCCCGCCACCACGAGAGTCGCACACAGGCA
TATCGTTTGCTACTAAAAGCAACGGAAATTTAAATCTTTTGATTTATGGT
GGAATGAGCGGCTGCCGCTTGGGAGATTTATGGTTGCTAGAAACAGACTC
CATGACTTGGTCGAAGCCGAAAACTTCAGGGGAGGCGCCGCTACCACGCT
CGTTGCACAGTTCTACATGATTGGCAACAAATGTATGTCTTTGGTGGCTG
GGTTCCCTTAGTGATCATGATCTAAATCGACAACAGAGCGTGATGGAAAT
GTACAAACTCTGCTGTCTTGACTTGAACATGACATGGAATGTCCATGACA
CTGTAAGAAATGTTCACCGGACTCTGCACTGGCAGTGCATCAAGTCGCTT
TAGTGTGTCAGT
FMO08419.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hcf-RG | 7812 | CG1710-RG | 148..1188 | 9..1037 | 4915 | 98.8 | Plus |
| Hcf-RF | 5190 | CG1710-RF | 452..1492 | 9..1037 | 4915 | 98.8 | Plus |
| Hcf-RE | 5372 | CG1710-RE | 526..1566 | 9..1037 | 4915 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 360691..361006 | 9..324 | 1580 | 100 | Plus |
| 4 | 1348131 | 4 | 362303..362613 | 324..634 | 1555 | 100 | Plus |
| 4 | 1348131 | 4 | 362671..362882 | 635..846 | 1060 | 100 | Plus |
| 4 | 1348131 | 4 | 362944..363112 | 845..1008 | 595 | 97 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:19:29 has no hits.
FMO08419.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:27 Download gff for
FMO08419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcf-RA | 407..1441 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:04:12 Download gff for
FMO08419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcf-RA | 446..1480 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:06 Download gff for
FMO08419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcf-RE | 520..1554 | 1..1027 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:06 Download gff for
FMO08419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 360685..361006 | 1..324 | 98 | -> | Plus |
| 4 | 362304..362613 | 325..634 | 100 | -> | Plus |
| 4 | 362671..362882 | 635..846 | 100 | -> | Plus |
| 4 | 362946..363112 | 847..1008 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:04:12 Download gff for
FMO08419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 381311..381632 | 1..324 | 98 | -> | Plus |
| arm_4 | 382930..383239 | 325..634 | 100 | -> | Plus |
| arm_4 | 383297..383508 | 635..846 | 100 | -> | Plus |
| arm_4 | 383572..383738 | 847..1008 | 97 | == | Plus |
