FMO08420.5prime Sequence
1167 bp (1062 high quality bases) assembled on 2010-06-07
> FMO08420.5prime
CAGTCGTCATGGGCTGGATTTTTGCTGTGCTCGTCGCACTGGTGGCTCTG
CTACTGACGAAACCCGGCTGGCGCTGGTTCTACATAGCGGGTGCGACCGC
TAGTCGCGATCTAACAGCTCTCTGGGCCTATATCAAGCTGCTGAGGTACA
CGAAGCGCCATGAGCGGCTCAACTACACGGTGGCGGACGTCTTCGAACGA
AATGTTCAAGCCCATCCGGACAAGGTGGCTGTGGTCAGTGAGACGCAACG
CTGGACCTTCCGTCAGGTGAACGAGCATGCGAACAAAGTGGCCAATGTGC
TGCAGGCTCAGGGCTACAAAAAGGGCGATGTGGTGGCCCTGTTGCTGGAG
AACCGCGCCGAGTACGTGGCCACCTGGCTGGGTCTCTCCAAGATCGGTGT
GATCACACCGCTGATCAACACGAATCTGCGCGGTCCCTCCCTGCTGCACA
GCATCACGGTGGCCCATTGCTCGGCTCTCATTTACGGCGAGGACTTCCTG
GAAGCTGTCACCGACGTGGCCAAGGATCTGCCAGCGAACCTCACACTCTT
CCAGTTCAACAACGAGAACAACAACAGCGAGACGGAAAAGAACATACCGC
AGGCCAAGAATCTGAACGCGCTGCTGACCACGGCCAGCTATGAGAAGCCT
AACAAGACGCAGGTTAACCACCACGACAAGCTGGTCTACATCTACACCTC
CGGCACCACAGGATTGCCAAAGGCTGCGGTTATCTCTCACTCCCGTTATC
TGTTTATCGCTGCTGGCATCCACTACACCATGGGTTTCCAGGAGGAGGAC
ATCTTCTACACACCCTTGCCTTTGTACCACACCGCTGGTGGCATTATGTG
CATGGGTCAGTCGGTGCTTTTCGGCTCCCGGTCTCAATTCGCAAGAAGTT
CTCGGCATCCACTATTTTGCCGACTGCGCCAAGTATAATGCAACTATTGG
TCAGTACATCGGTGAGATGGCTCGCTACATTCTAGCTACGAAACCCTCGG
AATACGACCAGAAAACACGGAGTGCGTTCTGGTCTTTGGAAACGGACTGC
AACGCAGATTTGGCACAGATGTGTGCAAGCGCTCCAACATGCAAGGGTGG
CGAGTTCTATGGGGCACGAGTATGCGAACATCATGATCATGAACAACGTG
GGAGCCATCGCCTTTGG
FMO08420.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fatp-RE | 2374 | CG7400-RE | 80..1247 | 9..1166 | 5145 | 96.8 | Plus |
| Fatp-RD | 2744 | CG7400-RD | 450..1617 | 9..1166 | 5145 | 96.8 | Plus |
| Fatp-RB | 3401 | CG7400-RB | 526..1693 | 9..1166 | 5145 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10512935..10513564 | 745..116 | 3120 | 99.7 | Minus |
| 2L | 23513712 | 2L | 10512668..10512870 | 945..745 | 840 | 96.6 | Minus |
| 2R | 25286936 | 2R | 23059470..23059725 | 234..489 | 605 | 82.4 | Plus |
| 2L | 23513712 | 2L | 10516486..10516592 | 115..9 | 535 | 100 | Minus |
| 2L | 23513712 | 2L | 10512491..10512608 | 1064..946 | 405 | 95 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:17:04 has no hits.
FMO08420.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:25 Download gff for
FMO08420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fatp-RB | 524..1673 | 9..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:22 Download gff for
FMO08420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fatp-RB | 526..1675 | 9..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:52 Download gff for
FMO08420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fatp-RB | 526..1675 | 9..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:52 Download gff for
FMO08420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10512668..10512869 | 746..945 | 96 | <- | Minus |
| 2L | 10512935..10513564 | 116..745 | 99 | <- | Minus |
| 2L | 10516486..10516592 | 9..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:22 Download gff for
FMO08420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10512668..10512869 | 746..945 | 96 | <- | Minus |
| arm_2L | 10512935..10513564 | 116..745 | 99 | <- | Minus |
| arm_2L | 10516486..10516592 | 9..115 | 100 | | Minus |
