FMO08421.5prime Sequence
1133 bp (1035 high quality bases) assembled on 2010-06-07
> FMO08421.5prime
CAGTCGACATGGAGCCATCGTTGGACAACTACAAGCTGAGCTGCGAGCTC
CTGGGCCACAGCATGGATGTGCGGGCGGTAGCGGTGGGACCTCCAACTCC
GGAAGGTCGCCAGACCATTCTGTCCGGTTCGCGGGACAAGAGCACCAAAG
TCTGGAAGCCCCATGGGAACGAGTACTTGGAAAGCCTTACTTTGCAGGAC
CACAAGAACTTCATCTCGTACATCTGCTTCCTGGAGTCGGAGCGGTGGAT
CTGCACGGCCAGCAACGACGCCACCATCTGCATCTACAAGCAGGACGGCT
TTGTGCCCCTGTTGACCCTCAAGGGTCACGAGTCCACGGTGTGTGCTCTC
TCGGCAGGATTGGAGCCACGAAGCCTCATCAGCGGCAGCTGGGACAAGAC
CGCTCGGGTGTGGACCATCAGCGAGGCGGGTGATGTGTCCTTCGTTGCTT
TAGAGGGACACGAGGCGGCGGTTTGGGCGGTGGCCACCTTGAAGGAGCAG
CGGAAGTATGTGACTGGTGGTGCGGACAGGAACATCTACTACTGGAACGC
GAAAGGCGAGAAGCTGCGCCTGCTTAAGGGTCACACGGATTGCGTGAGGG
GTGTCATGGGACTGGATGCGAACACACTGCTCTCCTGCGGAAATGACGCT
GTTCTCCGCTTCTGGAACGAGGATGGTGAGTGCGTGCGCGAGATGAACGG
ACACAGCAACTACATCTACTCCATGGCTCGCAATGAGGCTCTGGGCGACC
AAGTGGTGGTCTCCTGCGGCGAGGACAGCACGTTGCGCATGTGGAATGTG
ATCACCGGCGATGAGCTGGGAGCACCCATCATCCATCCCGGCATTTCAGT
GTGGTCCGTAACGTGCCTACAGAACGGGGACATTGTCACCGGCTGTAGCG
ATGGTGTGGTGAGGGTATTCAGCCACGTTCCTGCTCGCAAGCAAGTGAGC
AGTCCTTAAAGCCTTCGACTTAGTAGTGGCAACTAGAAAGTCTCAGATTA
TGAGAGATTGGTGCGTCAAGAAAACTGACCTTCCAGTTCGAGCTTTTTTT
GTCCATGAACGGCCGAGGTCAACGAAGATGGTGCGCATGCCGAATGTTTC
CGGGATGCTAACCTGACCTGGTACCTGGAACTG
FMO08421.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plap-RB | 2592 | CG5105-RB | 157..1298 | 8..1132 | 5110 | 97.5 | Plus |
| Plap-RC | 2746 | CG5105-RC | 311..1452 | 8..1132 | 5110 | 97.5 | Plus |
| Plap-RA | 2729 | CG5105-RA | 294..1435 | 8..1132 | 5110 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1168695..1169566 | 1028..162 | 4095 | 99.3 | Minus |
| 2L | 23513712 | 2L | 1169627..1169786 | 167..8 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:57:21 has no hits.
FMO08421.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:23 Download gff for
FMO08421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 287..1402 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:53 Download gff for
FMO08421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 287..1402 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:02 Download gff for
FMO08421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 287..1402 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:02 Download gff for
FMO08421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1168695..1169561 | 167..1028 | 99 | <- | Minus |
| 2L | 1169628..1169790 | 1..166 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:53 Download gff for
FMO08421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1168695..1169561 | 167..1028 | 99 | <- | Minus |
| arm_2L | 1169628..1169790 | 1..166 | 97 | | Minus |
