FMO08422.5prime Sequence
1143 bp (1060 high quality bases) assembled on 2010-06-07
> FMO08422.5prime
CAGTCGACATGCTCAAGGCTCTGTACGACTTCCAGGCGGTCTATCCGAAG
ACCATCAGCTTCGATGAGGGCGAGTACTTCATCCTTTACCAGACGTCCGC
CCGCCAGCGCAATTGGTGGCAGGTTGTCAGCATGAAAGGCAACATTGGCT
TTGTGCCCTCCAATTACGTAATGAAGATTAAGGTGGAGCACGACTTTCTC
ATCAGCTTTCTGAACTCCTCGATAGAATCGCTGGAGAAGTGCACGGACCA
TGAGATCAATGGCATCATGTCCAAGGACGAACTGCTGGACAGGCTGCGCG
AGAAGAAGCACACCATGGAGCGTCTGTATGCGGAGAGTTCCGAGCGCGAC
GGTGACTCCTCGCTTTCCTATTCACACAGCTACAGTGACAAGGGTAGCCA
CCGGCACTCGCATCCCCATCCCACCCAATCCCAGACGCAGCTTCATTCCC
AGCACAGGCAGCACAGTCCGCCGCCCAGCGGCGGCAGCGTTGGCTCCCAG
CGTTTGGACATGAGCAAGAAGAGCATGTCAAGTCCAGCGGTGGGCTCATC
GTGCGGCCTGCCCCAGAATCAGGGCATGATCGAATCGCCCAGCATGGGCA
GCATGCAGTTCCAGGGCAGCAGCTGCACCATCCAGACGCCGCAGCAGCAA
CAGCCGCTCCCAGCACCGCCAGCACCAGCTCCCTCGCCATCGGCAGCATC
GGCCACACCCACTGCGGCATCAACGAGCAAAGCGGCCACCGGCGGTGATG
TCGCGCAGGACAATAGCATTACGTCGGAGCCCTCGGAGACGACAACGACC
ACTACGACGACCAGCGAAGATGTGGTCACCACATACAAGGAGACCAGCCA
AATGAGCACCAGCCAGCAGCATAAGCCGCAAAATGGGAGCACTGCCTCGG
CGTCCATTTCCGCATCTGCCTCGGCCTCAGCTTTGCGCAGCAACGGCGGC
AACGGCAAGGCCACGGTAGTGCCACAGCCCTGCATCAGGAGCTGCAGCAG
GAGGAGCGGACAGTGCGCCGGACAGGTCGGATGATGCCAGCGCCGTGCAA
GGTGACGACGGTGCCCGGCAACGGGATATGGGGAATAAAGGCCAGGCCGC
TGGACAGCATCCAACAGTCGTCCCCATCGACGGCCGCCTGAAC
FMO08422.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2258-RD | 5277 | CG2258-RD | 474..1585 | 4..1111 | 5280 | 98.7 | Plus |
| CG2258-RA | 3570 | CG2258-RA | 1115..2226 | 4..1111 | 5280 | 98.7 | Plus |
| CG2258-RC | 3920 | CG2258-RC | 910..2021 | 4..1111 | 5280 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8098337..8099069 | 1062..332 | 3535 | 99.5 | Minus |
| X | 23542271 | X | 8099345..8099529 | 188..4 | 910 | 99.5 | Minus |
| X | 23542271 | X | 8099140..8099292 | 333..181 | 765 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 972..1035 | 617..684 | 123 | 69.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9188..9229 | 661..702 | 111 | 73.8 | Plus |
FMO08422.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:42 Download gff for
FMO08422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2258-RA | 1054..2186 | 1..1131 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:28:41 Download gff for
FMO08422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2258-RC | 908..2040 | 1..1131 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:25 Download gff for
FMO08422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2258-RC | 908..2040 | 1..1131 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:25 Download gff for
FMO08422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8099141..8099290 | 183..332 | 100 | <- | Minus |
| X | 8099351..8099531 | 1..182 | 98 | | Minus |
| X | 8098267..8099068 | 333..1131 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:28:41 Download gff for
FMO08422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7992300..7993101 | 333..1131 | 97 | <- | Minus |
| arm_X | 7993174..7993323 | 183..332 | 100 | <- | Minus |
| arm_X | 7993384..7993564 | 1..182 | 98 | | Minus |
