FMO08425.5prime Sequence
1118 bp (962 high quality bases) assembled on 2010-06-07
> FMO08425.5prime
CAGTCGACATGAGCAGTGATAAAGTGAAAAACGGCAACGAGCCCGAGGAG
TCGGAGGAATCATGCGGCGATGAGTCGGCCAGCTATACCACCAACAGCAC
CACCTCGCGCAGCAAGTCCCCGTCATCCAGCACGCGCAGCAAGCGCCGCG
GTCGCCGGAGCACCAAATCGAAGCCAAAAAGTCGCGCCGCCTACAAATAC
GACACCCACGTGAAGGAGAACCACGGAGCCAACATCTTCGGCGTAGCCTT
CAACACGCTGCTGGGCAAGGATGAGCCACAGGTCTTCGCTACGGCGGGCA
GCAACCGGGTGACCGTCTACGAGTGCCCTCGACAGGGCGGGATGCAGCTG
CTCCACTGCTATGCAGATCCGGATCCCGATGAAGTATTTTACACCTGCGC
CTGGTCGTACGACCTTAAGACCTCTTCACCTCTCCTGGCCGCTGCTGGAT
ACCGCGGAGTCATCCGGGTTATTGATGTCGAGCAGAATGAGGCGGTGGGC
AACTACATTGGCCATGGACAGGCCATTAACGAGCTGAAGTTCCATCCGCA
CAAGCTACAGCTTTTGCTTTCGGGCAGCAAGGATCACGCGATAAGATTGT
GGAACATCCAGAGCCATGTGTGCATTGCCATCCTGGGCGGAGTGGAGGGA
CATCGCGATGAGGTGCTGTCCATCGACTTTAATATGCGTGGAGATCGCAT
TGTGTCGAGCGGCATGGATCACTCGCTGAAGCTGTGGTGTCTGAATACGC
TCGAGTTCCATCACAAGATCGAACTGTCGAACACTTTCAGCCAGGAGAAG
TCAACGCTGCCTTTCCCCACGGTGACCATGCACTTCCCCGATTTTTCAAC
GCGTGATATACACAGGAACTATGTGGACTGTGTGCAGTGTTTCGGCAACT
TTGTGCTCTTCAAGTCCTGCGAAATGCCATTGTCTGCTGGGAAGCCGGGA
CAACTACATCAGTGGTTTCGAGCAGGTGAAGCCGAGCGACTCCTCCTGCA
CGATATCCGCGGAAATCCGAGTACGATGTAGTGCGAGATCTTGGTTCGTG
ATAATCCGGCTTCAATCCGTGCCAGAAGGTAATGCCTGGCATCAGCAGGG
TAAGGGGAATGGGTGGGT
FMO08425.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| esc-RA | 1704 | CG14941-RA | 166..1278 | 4..1117 | 4990 | 97.1 | Plus |
| escl-RC | 1532 | CG5202-RC | 662..915 | 501..754 | 295 | 74.9 | Plus |
| escl-RA | 1809 | CG5202-RA | 662..915 | 501..754 | 295 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11827671..11828371 | 1080..375 | 2945 | 96.7 | Minus |
| 2L | 23513712 | 2L | 11828736..11828907 | 374..203 | 860 | 100 | Minus |
| 2L | 23513712 | 2L | 11828970..11829103 | 202..69 | 670 | 100 | Minus |
| 2L | 23513712 | 2L | 11829175..11829240 | 69..4 | 315 | 98.5 | Minus |
| 2L | 23513712 | 2L | 11991701..11991954 | 501..754 | 280 | 74 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:37:40 has no hits.
FMO08425.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:17 Download gff for
FMO08425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| esc-RA | 160..1258 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:28 Download gff for
FMO08425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| esc-RA | 163..1261 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:13 Download gff for
FMO08425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| esc-RA | 163..1261 | 1..1100 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:13 Download gff for
FMO08425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11827673..11828371 | 375..1078 | 96 | <- | Minus |
| 2L | 11828736..11828907 | 203..374 | 100 | <- | Minus |
| 2L | 11828970..11829103 | 69..202 | 100 | <- | Minus |
| 2L | 11829176..11829243 | 1..68 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:28 Download gff for
FMO08425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11827673..11828371 | 375..1078 | 96 | <- | Minus |
| arm_2L | 11828736..11828907 | 203..374 | 100 | <- | Minus |
| arm_2L | 11828970..11829103 | 69..202 | 100 | <- | Minus |
| arm_2L | 11829176..11829243 | 1..68 | 95 | | Minus |
