FMO08427.5prime Sequence
754 bp (675 high quality bases) assembled on 2010-06-07
> FMO08427.5prime
CAGTCGACATGGCCGCCCAGGAAAACACGGAGATCAGCACAAAGTTCTCA
ACGCTGAACGTGAACGCGGTAGAATTTGTGCCCAGTTTCAGTTACAACAG
CGTTGTGAATGTAGCTGAGGAGGCGGCGGCAGTAGTGGTTGCAGCGGCTG
CGGCCGAGGAGACGGCGGATCCGGGTCCCGTCTCCGGTTCAGCCACGCCA
GCCACCACACCCGATTCCGTCGGCAGCGGGGGATCCACAGCGGGAGCAGC
TCCACCGCCTCCAACTGCACAGGGGGCGGGGGCAGCAGCACCCTCAGCAC
AGCCGCCCACATCATCCTCCAATTCCGCATCGCCAGCGCCGGGTTCGCCA
GCCACCACGCCTTCAGCAGGAGCAGCGGCGGCGGATCCAACGCCCATCGA
TGGTCTCAACCCCTCGGACAAAATCGCAAACAATGAAACCGATCCTGCTG
ACAGCTGGGATGTGGACGATGCAGTGATCACGCCCGAGGATGAGGAGGTG
GAAGATGCTGAGTTCTCGGAGGGCGAGGCCACGCCGAAGGTGTCCAAGAA
GAAGGTGGTTAAGGTGGAGGAAAATAGGAGCAAGCGTGAGCACGTGAATG
TTGTGTTCATTGGCATGTTGATGCTGGCTATTCAACAATTGGCGGACAGA
TCATGTCGCTCACGGGCTTGGTGGACAAGTCACACTGGAGAAGTACGAGC
GGGAGGCACGTGAGAAGTCCCGTGATAGTTGGTACTTGTCTTGGCGCTGG
ACAC
FMO08427.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elf-RB | 4120 | CG6382-RB | 546..1294 | 9..754 | 3520 | 98.3 | Plus |
| Elf-RD | 3003 | CG6382-RD | 106..854 | 9..754 | 3520 | 98.3 | Plus |
| Elf-RA | 3443 | CG6382-RA | 546..1294 | 9..754 | 3520 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12434997..12435423 | 9..435 | 2120 | 99.8 | Plus |
| 2L | 23513712 | 2L | 12437812..12437991 | 435..614 | 885 | 99.4 | Plus |
| 2L | 23513712 | 2L | 12438071..12438207 | 620..754 | 465 | 92.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:38 has no hits.
FMO08427.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:12 Download gff for
FMO08427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elf-RA | 556..1314 | 1..754 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:38 Download gff for
FMO08427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elf-RA | 536..1294 | 1..754 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:33 Download gff for
FMO08427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elf-RA | 536..1294 | 1..754 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:33 Download gff for
FMO08427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12434987..12435423 | 1..435 | 98 | -> | Plus |
| 2L | 12437813..12437998 | 436..620 | 98 | -> | Plus |
| 2L | 12438072..12438207 | 621..754 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:38 Download gff for
FMO08427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12438072..12438207 | 621..754 | 92 | | Plus |
| arm_2L | 12434987..12435423 | 1..435 | 98 | -> | Plus |
| arm_2L | 12437813..12437998 | 436..620 | 98 | -> | Plus |
