FMO08428.5prime Sequence
1132 bp (1008 high quality bases) assembled on 2010-06-07
> FMO08428.5prime
CAGTCGACATGTTGGCACAAACGCAAATTATCCCAACGCCTTGGCGACTT
TTGACCCTGGCTTTATTCTGCTCAGCTTTATTTTTGGCCAGTGAGGCTCA
AAATGCCATCCCAAAAACGAATCCTGCCTCGCTGCTGATACAGAAGACAT
CCTTCTCCTGCGCCGGACGTCCAGCCGGATATTATGCGGATGTGGAGACG
GGCTGCCAGGTGTACCACATGTGCGATGGCCTGGGTCGCCAGTTCAGCTA
CACCTGCCCAAACACGACACTTTTCCAGCAGCGAATGCTTATCTGCGACC
ACTGGTACATGGTGAACTGCTCCAAGGCGGAGAGCAACTATGCTGCCAAT
CTCCTAATTGGTCAGCGGGACAAGCCCTTCGTAAACGACGAGGAAAACAG
CTTGCGCACTCCAAGACCCGATCTTCTGGATCGTCCTTATGCGCCCGACT
ATTCCGGCGAGTCCTTCAGAAGCCAATATAAGTGGTTTACTTCCAACCAG
AATCAGATACGTGATGAGTCCGTCAAAGGAGCCGGTGCGGGTAAATCGGA
TCCCCAGATATCGCAGACGCGTTGGCGCATTCCACCACCCAGCCGGACGA
TCCTTCCACCGGCCTATGAACCGCAAATCGAGCTGCCCAGTGCCCAATCG
GCCAAGCCCAGGATACCCATTATCACTAGCACCACCACAACCACTCGAGC
GACCACCACCACCCGACCAACAACCACAACTCGTGCCACCACCACAACAA
CAACCACTCGAAGACCTCCGGTAACCGCCAGGCCGAAGGAGGCCTTGCAC
AACATGCGGCCAATTTCCAGGAGCATGATATGGATGACTTGGGGCACCAG
CCACAGCACACGGTACAACACCTCGGCAGACTTCAACTCGGCGGAGTCGC
CGCTCCGTGAAACGAAACAGTCCAGCACCAAGCTGACCAGTTCATCAAGC
CGCCGTCCAAGATTTATGAGCCACCCTTTGTGTACCCCATTCTACATCTA
GAGAGTTCCAGACCCATAACGCGCAGTCGGCCACCACACTGGCGCACATC
ACGGCGTCTCCTTTCAGTCCTGTTCAAGTCGCAAGGGAGTCAGACACCAA
CTCCACGTAATCACTGGAGTCGTACGACGACT
FMO08428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14880-RA | 2591 | CG14880-RA | 505..1634 | 3..1131 | 5095 | 97.4 | Plus |
| CG14880-RB | 2599 | CG14880-RB | 513..1642 | 3..1131 | 5095 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16361322..16361933 | 1093..485 | 2450 | 95.9 | Minus |
| 3R | 32079331 | 3R | 16362179..16362447 | 362..94 | 1345 | 100 | Minus |
| 3R | 32079331 | 3R | 16362002..16362124 | 482..360 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 16365516..16365609 | 96..3 | 455 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:19:20 has no hits.
FMO08428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:10 Download gff for
FMO08428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RA | 502..1611 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:04:06 Download gff for
FMO08428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RB | 512..1621 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:00 Download gff for
FMO08428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RB | 512..1621 | 1..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:00 Download gff for
FMO08428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16361307..16361932 | 486..1107 | 96 | <- | Minus |
| 3R | 16361996..16362123 | 361..485 | 97 | <- | Minus |
| 3R | 16362181..16362445 | 96..360 | 100 | <- | Minus |
| 3R | 16365517..16365610 | 1..95 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:04:06 Download gff for
FMO08428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12187029..12187654 | 486..1107 | 96 | <- | Minus |
| arm_3R | 12187718..12187845 | 361..485 | 97 | <- | Minus |
| arm_3R | 12187903..12188167 | 96..360 | 100 | <- | Minus |
| arm_3R | 12191239..12191332 | 1..95 | 97 | | Minus |
