FMO08430.5prime Sequence
1134 bp (1039 high quality bases) assembled on 2010-06-07
> FMO08430.5prime
CAGTCGACATGGAGTTCGACGCCACGTACCACGAGATCTGCTCCGCGCAG
ACGGTTCAGTCGGAGAGGAGGGGATTCTTCAACGAATTTTGCGTGGACGT
GCGTGATGCATGTGGCGACAAGTGGCTGCGCAACTACTTTGGCAAACTGA
AGTCCAATGCAGCCCGAGTTCTGTCCATTTTCAGCGATCGCGAGGTGTGC
GATCCTGTGCTGGGTGTCCTGGAGCATGTACAGCCGGTGTTCAAGCAGAA
GGATGCCCTCTTCTCGGCCCAGCGACGTGCACAGGCGGATAAGCTCTACC
TGATGAGCGGCAGTGGCGACGGCGAGGAGAGCAGGGAGCTGCTGCAGCAG
GCTCTAATGGCCGCCAATCTGGCCGTGATGCGGGCTCCCGACCGCAATGC
AGATCCTGTCCTCGATGAGGGCCTCACCTTGGCATTGGCCTACAGATCGA
GGGCTTCCATATTGATCCGCTTGGGCGAGGGGGAGGCAGCATTGAATGAC
CTCAAGCTGGCCATCAACTTTGGACTGGAGCTCAAGTCCAGTGTGGATTA
CTACTTAAAGATGGCCAAAGCCTATGCAGTCATGGGAGAACCTGCCCGCG
CTGAGATCTCATTGAAGATAGCCGAGAAAATGCCTGGCTGTGATGCCACC
CACATCGCACTGTGCCGCAAGGAACTATCATCAGTAAAGCCGAAACCCAA
GGAAGCCACCTCGGAACAGGTGCCACAACTGGCACATGGCGAGAGTGCCG
AACTAGTTGGTGCGTCCAAGGTGGTGAGGCTGGTGGAGACCAAGGACAAG
GGTCGTTTTGTGGTGGCCAACGAGGGTCTGAGAACCGGCGACGTTCTGCT
CTTCGAGGAGCCAGTGGCCGCCTGTTTGGAGCCCAGTTACTTTGGCACTC
ATTGTCATCATTGCTTAAGAGGCTGCACACTCCCGTTTCCTGTCTCCACT
GCTCGGGATTCGCCTTCTGCTCCGCCCAGTGCATGGGCGAGGCCTGCTCC
AGTTACCATCGCTTCGAGTGGCGAGTATTTTGGAACTTGATGATCCGGTT
CTGGCATTGTCCATCCTGCGCTTCATCGCGCTGCCCATCCTTCACACAGG
CGCCAGCTTGTAAGAGGCTTGTCCACCTCCATCT
FMO08430.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smyd4-RA | 2165 | CG14122-RA | 109..1235 | 2..1131 | 5275 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12401250..12401827 | 579..2 | 2860 | 99.7 | Minus |
| 3L | 28110227 | 3L | 12400855..12401194 | 916..577 | 1700 | 100 | Minus |
| 3L | 28110227 | 3L | 12400612..12400790 | 1104..920 | 585 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:00:21 has no hits.
FMO08430.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:05 Download gff for
FMO08430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14122-RA | 89..1206 | 1..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:28 Download gff for
FMO08430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smyd4-RA | 108..1225 | 1..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:28 Download gff for
FMO08430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smyd4-RA | 108..1225 | 1..1121 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:28 Download gff for
FMO08430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12400593..12400788 | 922..1121 | 92 | <- | Minus |
| 3L | 12400849..12401191 | 580..921 | 99 | <- | Minus |
| 3L | 12401250..12401827 | 1..579 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:28 Download gff for
FMO08430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12393693..12393888 | 922..1121 | 92 | <- | Minus |
| arm_3L | 12393949..12394291 | 580..921 | 99 | <- | Minus |
| arm_3L | 12394350..12394927 | 1..579 | 99 | | Minus |
