FMO08431.5prime Sequence
1120 bp (1058 high quality bases) assembled on 2010-06-07
> FMO08431.5prime
CAGTCGACATGCTGCGGAATAGCACTTACCAGTACAATCTGCCCGTCGAT
TACCACAATATTCAGCAAATGGCAGTCGCTGGCGACATGATGGAGGACTT
TGTGGTCATATTTCGCGATATGATGGGACGGTACCTCGACATTGGCGAGG
ATATGAACGTACCTGATGACTTCACACAGAAAGAGATGCAGACGGGCCTC
TGGTGGCGACACTTGGTGGCCGGTGGCATAGCTGGAGCAGTTTCTCGGAC
GTGCACGGCGCCTCTGGACAGGATTAAAGTGTACTTGCAGGTACAAACAC
AAAGAATGGGAATCTCAGAGTGTATGCACATCATGCTGAACGAGGGCGGA
TCGCGGAGCATGTGGCGAGGCAATGGCATCAATGTGTTGAAGATTGCCCC
CGAAACGGCTTTCAAGTTCGCTGCCTACGAACAGATGAAGCGACTGATTC
GCGGTGACGATGGCAGCCGCCAGATGAGCATCGTGGAGCGATTCTATGCG
GGCGCAGCGGCAGGCGGAATTTCACAGACCATCATCTACCCCATGGAAGT
ATTAAAGACGCGCCTGGCGCTCCGGAGAACGGGACAGTATGCGGGTATTG
CCGATGCGGCGGTCAAGATCTACAAGCAGGAAGGAGTGCGCAGCTTCTAT
CGTGGCTATGTACCGAACATCCTGGGTATTCTGCCCTATGCCGGCATCGA
TTTGGCGGTATATGAAACCCTCAAGAGGCGGTACATTGCCAATCACGACA
ACAACGAGCAGCCCAGCTTTCTAGTGCTCCTCGCATGCGGCAGTACATCG
AGCACACTCGGGCAGCTCTGCTCGTACCCGCTGGCCCTGGTGCGCACTCG
GCTACAGGCACAAGCCGCCGAAACAATTGCCAATCAAAAGCGGAAAACGC
AAATACCCCTGAAGAGCAGCGACGCGCACAGCGGCGAGGAAACGATGACG
GGCCTGTTCCGCAAGATCGTGCGAAAGAAGGACTGACGGGGCTGTACGGC
GGCATAACGCCAAAACTTCCTCAAGGTCCTGCCGGCGGTGTTCATCAGCT
ACGTGGGTGTACCAAGTAAACGAGTCCCGCCCTGGGCATTAAGAATGTCC
GCAAGCTTTCTAGAAACAAT
FMO08431.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32103-RC | 2060 | CG32103-RC | 419..1502 | 9..1094 | 5215 | 98.9 | Plus |
| CG32103-RE | 3836 | CG32103-RE | 1108..2068 | 132..1094 | 4600 | 98.8 | Plus |
| CG32103-RD | 1603 | CG32103-RD | 85..1045 | 132..1094 | 4600 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12404363..12404939 | 864..288 | 2885 | 100 | Minus |
| 3L | 28110227 | 3L | 12404063..12404292 | 1094..863 | 860 | 95.3 | Minus |
| 3L | 28110227 | 3L | 12405000..12405161 | 292..131 | 795 | 99.4 | Minus |
| 3L | 28110227 | 3L | 12408110..12408232 | 131..9 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:17 has no hits.
FMO08431.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:01 Download gff for
FMO08431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32103-RC | 408..1507 | 1..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:18 Download gff for
FMO08431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32103-RC | 412..1511 | 1..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:28 Download gff for
FMO08431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32103-RC | 412..1511 | 1..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:28 Download gff for
FMO08431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12404054..12404290 | 865..1105 | 93 | <- | Minus |
| 3L | 12404363..12404936 | 291..864 | 100 | <- | Minus |
| 3L | 12405002..12405160 | 132..290 | 99 | <- | Minus |
| 3L | 12408110..12408239 | 1..131 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:18 Download gff for
FMO08431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12401210..12401339 | 1..131 | 96 | | Minus |
| arm_3L | 12397154..12397390 | 865..1105 | 93 | <- | Minus |
| arm_3L | 12397463..12398036 | 291..864 | 100 | <- | Minus |
| arm_3L | 12398102..12398260 | 132..290 | 99 | <- | Minus |
