FMO08432.5prime Sequence
1059 bp (525 high quality bases) assembled on 2010-06-07
> FMO08432.5prime
CAATCGACATGCACAAGGAAAAAATTATTAATTCACAGAATGCTAGCAAA
ATAAACCAAAAAGATCATAAACCCAATGGAAATACAAATGAAAGTAGACA
TAAAACAGTGAGTTTAATAAACAAAAAAGATGACAAAGAATACGACCTTG
TCCCACCTGATGGTGGTTGGGGTTGGTTAGTGCTGCTGGGCTCGTGCTTG
ACTAACATTTTAATCCCTGGCACAATAAAAAGTTTTGGAATATTATTTTC
GGAGTTCACCGATGCATTCAACTCTTCTCCTACGAAGGCTGCCTGGATAC
CAGCCCTGTGTTATTTTCTTTATAGTTCATTGGGCCCGGTTTCAAGCATT
CTATCTGTGAAGTACTCATATCGTACTGTCACCCTTCTTGGTGGGGCATC
TGCGTCACTGGGTATGATACTCTCCTTCTGGGCATCATCTATTGAGTTCT
TGTATATCATCTATGGCGTTTTGGTCGGAATCGGGGATGGTCTCTCTTTC
CCCCCCACAGTTTACATTGTGACGTCATATTTTGCAAAACTACACGGATT
AGCGAATGGCCTCTGCATTTCCGGTAGTGCTTTAGGCAGCATAATTTTGC
CGCCCCTTCTTCGTTGGCTACTAAAGACCTATGGCTATCACGGCTCCTGC
CTAATTATGGGTGGCATTACTTTGAACGTATGTTGTCGCTGCTCTTTTCT
ATGAGCCTGTTGAACAACATATGGTACGAGTACCTCGAGCTCGCCAGGCT
TTGGAAATATTCCATATAGGAGGATATTGGAATCGTAATGAAGTTCGAAA
ATGTTGACGAGCCGGTTCCCAAAATGACCGGCTGACAAGCCATTGTTACC
ATATAATTCGCCTCCTCTCATCTGTATTTACCTGGTGATGAGAGGGTGCA
GTTTGTGCGTATCGCATCCACTCTGTTGTCAAAGCTACTCAAGTCTGGAA
CGAGTTTCATCTCGATCGCAAAGAACAGTAGCCGGTGAAGTTCCCCAAAA
ATCAAGCATTTACTCTGGTCAAATGATCCAAACATATGGAACCTATGCGG
AAGGGAATG
FMO08432.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11665-RB | 3393 | CG11665-RB | 320..1319 | 8..996 | 4365 | 96.6 | Plus |
| CG11665-RA | 2635 | CG11665-RA | 320..1319 | 8..996 | 4365 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5643073..5643535 | 919..461 | 1840 | 96.1 | Minus |
| 2R | 25286936 | 2R | 5643816..5644045 | 334..105 | 1135 | 99.6 | Minus |
| 2R | 25286936 | 2R | 5643593..5643719 | 459..333 | 635 | 100 | Minus |
| 2R | 25286936 | 2R | 5647722..5647822 | 108..8 | 490 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:41:40 has no hits.
FMO08432.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:58 Download gff for
FMO08432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-RA | 281..1298 | 1..1004 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:00 Download gff for
FMO08432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-RA | 313..1330 | 1..1004 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:15 Download gff for
FMO08432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-RA | 313..1330 | 1..1004 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:15 Download gff for
FMO08432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5642978..5643535 | 461..1004 | 94 | <- | Minus |
| 2R | 5643592..5643718 | 334..460 | 99 | <- | Minus |
| 2R | 5643817..5644041 | 109..333 | 99 | <- | Minus |
| 2R | 5647722..5647827 | 1..108 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:00 Download gff for
FMO08432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1530483..1531040 | 461..1004 | 94 | <- | Minus |
| arm_2R | 1531097..1531223 | 334..460 | 99 | <- | Minus |
| arm_2R | 1531322..1531546 | 109..333 | 99 | <- | Minus |
| arm_2R | 1535227..1535332 | 1..108 | 95 | | Minus |
