FMO08434.5prime Sequence
1221 bp (1084 high quality bases) assembled on 2010-06-07
> FMO08434.5prime
CAGTCGACATGAAGGAGTTTAGTAAAATGTTTGCGCGACGATATAGTTCA
GTATCAAGAGACGTAGAGGCCAGCAATCAGCGGCAGTCAGCAGTGACCCC
TGGATCTGGGTTGAGCACAGACGCAGATCCTGCGGTGTCTTGTGCCGCTC
AGGTAGCACTGCAACGAATCCAGCGCCGCAAAAGTCTCAAGGCAAATCGT
TCAATGAATCCGATAGACATACTAAGCAGCTTTTTCAACGAGCCAATCCA
AGGCAAACGGAATCGAGTTCCTACCCGTTTATTTATACTTCTAGTCATCG
GATTTTTGGCTATTATAACATCTACACTGATTAAAGTTTTGGAACCATAC
GATTTGATATTTAAATGGAAATTAATCATGACAGAGGGAGGTGAGATCTT
TAATCTGTGGGCCCAGCCTCCAGTCGATCTGTATATTAAGATATATTTGT
TCAACATAACCAATGCCAACGCGTTTTTAGCGGGTCGCGAGCAGCTTAGA
GTCGAACAAGTTGGTCCCTATGTTTATAAGGAGATAATGACACATGAGAA
TGTAACGTTCAATTCGAATAACACCATGTCCAGCACTCCCAGTCATCCCT
TAGTCTGGCAGGAGGAAATGTCTGGGAATTGTCGTGAGGACGATGAGGTT
GTAATGCTCAATATTGCCATGCTGGCAATATCACACCTTACTGCCAACCA
GCCGTTCTTAGTTAGAATGGCTCTGAAGACACTACTACTGAGTACAAAGT
CGGAGCCAATAGTTCGCACCACTGCCAAGGAATTCATGTTTGGCTATCCC
TCCGCCCTGGCCACTCTCGGCAACACCTTCCTTCCAAATTGGATTTCCTT
TGAAAAGGTTGGGCTTATCGATCGCATGTACGACTTCTCAACGGATTTCG
AGACGTTCTACACAGGCGTGCCCAATCCAGCGCTTTCGGGATTATATGCA
TCGTATCGCGGAGAGACAACGCTGCCACAGTGGGACGGGGACCATTGCAG
CAACATAGAGTTTGCATCTGATGGTACAAAGTTCAAAAGCTTCATTCAGC
CTACGAGACCGTTAGGTTCTTCCGAAAAAAGCATTGGTGTTGAACCGATA
TACTTGTACCGGTGGGAAACGAAAACTTGGCGAACCTTAGGAATTAATTA
TGTATTTGGAGATAACGCTTGTATATGGCCCACTATGAAGCCTAACACAA
TGTTTTGTTGATGAAAGAGTG
FMO08434.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40006-RA | 2590 | CG40006-RA | 226..1428 | 9..1206 | 5435 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22688204..22688610 | 1079..674 | 1970 | 99.5 | Minus |
| 2L | 23513712 | 2L | 22755855..22756124 | 278..9 | 1335 | 99.6 | Minus |
| 2L | 23513712 | 2L | 22718566..22718728 | 530..368 | 815 | 100 | Minus |
| 2L | 23513712 | 2L | 22718367..22718512 | 675..530 | 730 | 100 | Minus |
| 2L | 23513712 | 2L | 22718884..22718975 | 368..277 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:48 has no hits.
FMO08434.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:35:22 Download gff for
FMO08434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40006-RA | 218..1396 | 1..1175 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:12 Download gff for
FMO08434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40006-RA | 218..1396 | 1..1175 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:39 Download gff for
FMO08434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40006-RA | 218..1396 | 1..1175 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:39 Download gff for
FMO08434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22688181..22688609 | 675..1106 | 98 | <- | Minus |
| 2L | 22718368..22718512 | 530..674 | 100 | <- | Minus |
| 2L | 22718567..22718727 | 369..529 | 100 | <- | Minus |
| 2L | 22718884..22718975 | 277..368 | 100 | <- | Minus |
| 2L | 22755857..22756132 | 1..276 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:12 Download gff for
FMO08434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22580913..22581341 | 675..1106 | 98 | <- | Minus |
| arm_2L | 22611100..22611244 | 530..674 | 100 | <- | Minus |
| arm_2L | 22611299..22611459 | 369..529 | 100 | <- | Minus |
| arm_2L | 22611616..22611707 | 277..368 | 100 | <- | Minus |
| arm_2L | 22648589..22648864 | 1..276 | 98 | | Minus |
