FMO08437.5prime Sequence
938 bp (694 high quality bases) assembled on 2010-06-07
> FMO08437.5prime
CAGTCGACATGGACTTGGACGATGTGGCTAGTCATCACGGATTCGGTCAA
CATATGGCCACGTACAATGTAGAGACCTCGGCGGTGCACAGGAAACTTCA
AAGCAAGGTGGAGGCACTTCGAATCCTGCGCCAGGAGCTGGAACAGTTTC
GCGTGGAGCGAGACCAGTACAAGCTGGTGGCGGAGACCCTGCAGCTGCGC
TACTCCGCGCTGAAGAGTAATAGCGAACTTCTGGCTGTCGGTGGATGTGG
AGCCCTCAGCGAGAACTCCAGCCTGGCAGCCCTGCTCCACGAGACGCGCG
AGCAGAACCTAAAGCTCAGCACCGAAGTGGAAGCCCTGAGGCAGCGGCTC
AACGAGCTGCATGGCGACTTGGAACTACTCCGGGAGACGGAGGCCAGCAA
CAAGTCGCGGGTACAGGCAATGGCCAGCGAGAATGCCGCTCGCAACAAGG
AGGAGCTGCAGTGGCGTCGTGAGCGGGCAAACTTTATCTGCCACCTGGAG
GGCCTCAAAAAAAGGAATGCCCAGCTGGCCTTCGACCTGAAGGCGGTGAT
CGATGAGAAGGAGGAGCTGATAACCGAGCGGGATGCCTACAAGTGCTAGG
CACACCGCCTAAATCATGAACTCTTTGTGGCCCTCAGGGCGAAGAAAACG
CATCCAAGGCTCCTGGACATCGATGGTGTTTTGCTGGAGAACAATGTACC
TGTATGAACGTGTGATGATCCAATACAGCGAACTGGAGCTCACCAAACAG
AGCATCATTAATTACAAGACATTGTTGGATGCAAAACGAATTAAGGGAAT
TGTTAATCTTGGCGGTGGTATCATAATGAGTACTTCATTTCTAGCCCCCG
GGCAAGTGTAAACATTCCTCGAGATGTGTTTTTGAGCTTGCTTCATAAAT
CCGATAGCTTAGCGATCTAAAATCCTTGTGTCTTGGCC
FMO08437.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14868-RA | 1844 | CG14868-RA | 163..1090 | 4..933 | 4045 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15369066..15369652 | 659..73 | 2905 | 99.7 | Minus |
| 3R | 32079331 | 3R | 15368906..15369014 | 768..659 | 425 | 94.5 | Minus |
| 3R | 32079331 | 3R | 15369713..15369783 | 74..4 | 340 | 98.6 | Minus |
| 3R | 32079331 | 3R | 15368798..15368849 | 818..767 | 185 | 90.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:10:19 has no hits.
FMO08437.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:47 Download gff for
FMO08437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14868-RA | 149..1083 | 1..938 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:11 Download gff for
FMO08437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14868-RA | 160..1094 | 1..938 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:07 Download gff for
FMO08437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14868-RA | 160..1094 | 1..938 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:07 Download gff for
FMO08437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15368906..15369013 | 660..768 | 94 | <- | Minus |
| 3R | 15369066..15369650 | 75..659 | 99 | <- | Minus |
| 3R | 15369713..15369786 | 1..74 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:11 Download gff for
FMO08437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11194628..11194735 | 660..768 | 94 | <- | Minus |
| arm_3R | 11194788..11195372 | 75..659 | 99 | <- | Minus |
| arm_3R | 11195435..11195508 | 1..74 | 97 | | Minus |
