FMO08438.5prime Sequence
1105 bp (949 high quality bases) assembled on 2010-06-07
> FMO08438.5prime
CAGTCGACATGAAACGGACATACTTGTTGCTCTGCCTGAGTCTCCTCACC
TGCAATGTGGCCAATTCGGCATACCTGCGTCCAATCGATCTTAACCAGCT
AGCCAAGTCCTCCAACCTTCAGCAGCAGCAGCAACAGCAGCTGCGTGGCG
CTTTGAACCGAGATGATAACAACGATGACGATGATGCCACCACCTTGGCA
CCCAATTCCAACGAGGATTACGACACTCGTCCCCAGTACAGTTTTGCCTA
CGATGTGAGGGACTCGCTGACTGGCGATGACAAGCGGCAGGAGGAGAAGC
GCGATGGCGACCTGGTCAAGGGTCAGTACTCCCTGATCGAACCCGATGGC
ACCCGTCGCATTGTGGAGTACACGGCCGATGATGTGAGTGGCTTCAATGC
CATTGTGTCTAAGCAGCGTCTGGATGAGCAGCAGCAGCAAAGGCTCTCCG
CCTCCACTTCGTCCCGTTTCAACAGCCTCGAGGAACTGCAGACCCGTCTC
ACCGCCCAGGCCATTGCGGAAGCCCAATCTCTGGTGGAGGCCCAACAGGC
TAGCCAACTGCAGCTGGAGGCGCAGAATCGTCGAGAATCGGAAAACCAGG
CACGCAACCAAGCCCAACAGCTCATGGAACAGTTCCAACAACAGGTGCAA
CAGCAGGAGCAGCAGCGTCTGCAGCAGGAACAACAATTGAGGGATCTGCA
GCGCCTGCAGGAGCAACGAGATCGCGAGGAGCGTGATCGTGAGCAGCGGG
AGCGGGAGCAGCGTGAGCGGGAACAGCGCGAGCGCCAGCAGCGGGAACAG
GAACTCCGGGAACGGGAGCTGCGCGAGCGCGAACTCCGTGATCGTAACTC
CGTGATCGTGAACTCCGGGATCGGGACAGCGTGATCGGGAGCAGCGTGAC
CGCGAGGATCGCTGCAGCAGCGGAGCGTCGTCAGAGTCAGACCAGCGATG
CTCGACCAGCAGACACTACTTCCTGGCCCAAGCCTGCCCAGTATTCAGGC
CACGGTGTCTCCCATCCACCAATTTGCTCGGCACCCGCCTGCCCGTCCGC
TCCATCCCCAGCTGTCGAGGACTATCATCTTGCTGAACAGGTATCGTATC
TGGAA
FMO08438.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cry-RB | 2261 | CG16963-RB | 106..1198 | 8..1091 | 4970 | 97.7 | Plus |
| Cry-RA | 1886 | CG16963-RA | 106..1198 | 8..1091 | 4970 | 97.7 | Plus |
| Ccp84Ag-RA | 1097 | CG2342-RA | 221..313 | 288..380 | 225 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11944985..11946068 | 17..1091 | 4670 | 97.3 | Plus |
| 3R | 32079331 | 3R | 6687163..6687255 | 288..380 | 225 | 82.8 | Plus |
| 3R | 32079331 | 3R | 6689809..6689974 | 373..208 | 215 | 75.3 | Minus |
| 3R | 32079331 | 3R | 6693017..6693155 | 212..350 | 215 | 77 | Plus |
| 3R | 32079331 | 3R | 6691322..6691424 | 350..248 | 185 | 78.6 | Minus |
Blast to na_te.dros performed 2014-11-28 19:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3344 | 642..710 | 140 | 71.4 | Plus |
FMO08438.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:45 Download gff for
FMO08438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cry-RA | 87..1174 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:53 Download gff for
FMO08438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cry-RA | 99..1186 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:11 Download gff for
FMO08438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cry-RA | 99..1186 | 1..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:11 Download gff for
FMO08438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11944985..11946056 | 17..1080 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:53 Download gff for
FMO08438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11944985..11946056 | 17..1080 | 97 | | Plus |
