FMO08439.5prime Sequence
1135 bp (1024 high quality bases) assembled on 2010-06-07
> FMO08439.5prime
CAGTCGACATGGAGGAGTCACCTTACCTGCACAGCCCCTACCAGGTGGCC
ATTATAGCCACCGACCTGCACCACGAGGATACCATAATCCAAGCAGCCCA
GTCCCTGGACTGTCTACACAAAACCATAAACTCGATTTTCGAGCGAATCG
ATGCCCGCTTGGCGAGAAATGGTTCAAAGGTTGAGGACATAAACAATCGT
GTGAAGCGCGCTCAGGCAAAAATCGATGCGCTCGTTGGCTCCAAGCGGGC
CATCCAGATCTTTGCACCCGCCCGCTTTCCGGCCAGCGACGTCCTGGCAC
CGCTGCCAGCCACCTTTCCACAGGTGGCAGCCAATCCCCTAATGGAGCAG
CAAGAGGACCAGCTCCCGCAAGGGACGTACAGCAGTCACAGTGCCGCGGA
CCAGAAGCCGGATGATGCGGACATCTTTTTCCATGTACGTGGCGATCGGG
AGCAGGAATCGCCACTGGTCGCCGAACGGAAGATAACCAATCGGACCGCT
GGCCTGGGCATCCTGCCTGCGGGTGGAGTGCGCTCCGTACCCTCGCTCAT
GCGATTCAATACCAATGAGTTCGCCTACGGCGAGGATCTGAATGCCTGGA
AGCGATCCCTACCGCCGCAAAATGCTCGACGCGTTGCCAGTCAGTCCACT
CAACTCACGGGAGAAAAGCAGCTCGCTCCGGCACCTCATTCGCTGGCCCA
CGGCACCACCAAACTGGCCACTCCAGCTGGGGACCTGCGCTACAATCCTG
CTGCTTTGGCTGCACCCGCCATTGATGTTCCGCTGGACCTGCCCGACCTA
CCGGGCATAGCGAATGATCTGCAATATGAGCCAGTGGAGGAGCAAACACC
AATAGCGCCTTCCAGCAGTTCGGTGATTTACCAGAGCTGCCGGATTTGGG
CCTCGAGGAGCATGATATAATAGTGCAAGCCATCGCGGCACAGACGCACA
TTCCGGGACCGGTGCGTAGGAGAGTGTGGGACAATGTCCTTCGCCAGTTA
CGGCGGCACCACGTCCTCCTCTCGCACATCGCGCTCACCTTCTCACAGCG
CAGACGAGGCCATTCATTCACCGCCACCTTCACAAGAGCGGGAAACGCTC
TCCCGTCCGTTGCACACTCCTAACTGCCACGCCCT
FMO08439.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wash-RB | 1796 | CG13176-RB | 124..1205 | 9..1078 | 4975 | 98.1 | Plus |
| wash-RA | 1751 | CG13176-RA | 79..1160 | 9..1078 | 4975 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12180701..12181715 | 9..1021 | 4915 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:27:23 has no hits.
FMO08439.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:44 Download gff for
FMO08439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13176-RA | 56..1143 | 2..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:17 Download gff for
FMO08439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wash-RA | 73..1160 | 2..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:39 Download gff for
FMO08439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wash-RA | 73..1160 | 2..1078 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:39 Download gff for
FMO08439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12180695..12181782 | 2..1078 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:17 Download gff for
FMO08439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8068200..8069287 | 2..1078 | 97 | | Plus |
