FMO08440.5prime Sequence
1143 bp (951 high quality bases) assembled on 2010-06-07
> FMO08440.5prime
CAGTCGACATGCTGCTCAGCGAGACCCATTTCTGGACCACGTTGCGCGAG
GATGTGGTGCGGATCAAGAGCCAGGACCTGGGCGCCTTTCGCTACCTCAG
GCAGCGCGACAAGGAGCAGGAGCAGCAGGACCTCGCCTGCCTGGCCAAGC
GAGACTATACGGAGCGTCGCAATGGACTGGCCGTGCTGAAGAACTCTGGT
CGCAAGTCCACCGGCCGCTTGAAGGACAACCTCAAGAAGCTGGAGGACCT
GCTGCGCCAGCACAGGATCATCCACTCCGAGTGGCAGGACGCGGCGCAGG
TGCTGCTCCTCTTCTCACACGGCCTGATCGCCCACATCTGCGTGGACATC
TACACGGGCGACATTCTGCGCATGGTCTTCGAGAAGTACCTGGTGGGCAA
GCTCGCCTCCGAGGTCATTACGGATGCTTTTTTCACCCGTTCCCACATCG
TCTTGGCCTACAATACCAACCAGCTGACGGTGGTGCATCTGCAGAGGCCT
AATGCTCGCTCCCAGGGACCGGAGAAGATCGCCAATATGGATCCGCGCAT
CTTCCACGTGATCATACCGGGCGCCACAGAGCGCAAACTATCCCGCCACC
TCACAGTTAACGCCAGCTTCGATCTGTTCGTGGTTTGGACGCAGTCCTCG
CATAACGAGGTGTATCCCTGGAGGCCAACGATAAGGGACCAAGATCGTGC
CAACATACATGTGTTCAAGATCAAGGGCTTGCAGCTGGAATCGATTGCCT
ATTGCTGGTCGGAGAACGATCCGCTGTGCGTGGACTTTCCTTGCGAAGCA
GCGAGAGCCAGATCATCACCCTGGAGCATATGGTTTCCCGCAAGGGCGAC
ATAATCGCATAATTCTGCTCCTACGAACTGGCCGCCGGCAAGATGCAGCG
CACGCCATTACCTCCATTCCAATGGGCGCCCAGATCCTGCTCCTTTGCCT
TCAGCCCCGACCAGGAAGAAGCTCTTCCTGGGCAGCGTCGATCGCATATC
TGCCTGCAGACCTGGTCCGTCAATCTACAAATACCCCAACCTGATTGAAA
CGTGCCAATCATGGGGCCTGGGACATGCAATCCGCCATGGTTGCGGGGCC
ATAGAATGGACTGGTGTGCCTGGCTCTCCACTGGGGCGCGTGT
FMO08440.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frtz-RD | 3586 | CG17657-RD | 296..1391 | 9..1101 | 4880 | 97 | Plus |
| frtz-RB | 3303 | CG17657-RB | 296..1391 | 9..1101 | 4880 | 97 | Plus |
| frtz-RA | 3601 | CG17657-RA | 296..1391 | 9..1101 | 4880 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1715139..1715556 | 426..9 | 2090 | 100 | Minus |
| 2L | 23513712 | 2L | 1714173..1714474 | 727..426 | 1495 | 99.7 | Minus |
| 2L | 23513712 | 2L | 1713797..1714118 | 1048..727 | 1085 | 93.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:06:44 has no hits.
FMO08440.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:43 Download gff for
FMO08440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frtz-RA | 306..1327 | 9..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:38 Download gff for
FMO08440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frtz-RA | 296..1317 | 9..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:38 Download gff for
FMO08440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frtz-RA | 296..1317 | 9..1031 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:38 Download gff for
FMO08440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1713815..1714117 | 728..1031 | 94 | <- | Minus |
| 2L | 1714173..1714473 | 427..727 | 99 | <- | Minus |
| 2L | 1715139..1715556 | 9..426 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:38 Download gff for
FMO08440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1713815..1714117 | 728..1031 | 94 | <- | Minus |
| arm_2L | 1714173..1714473 | 427..727 | 99 | <- | Minus |
| arm_2L | 1715139..1715556 | 9..426 | 100 | | Minus |
