FMO08441.5prime Sequence
1026 bp (860 high quality bases) assembled on 2010-06-07
> FMO08441.5prime
CAGTCGACATGGGGCGGCTAACCATTTGGTTCCTACTGGGACTAACGTTA
ATCGCCGTTTCCAATAATGTTGGGTTTGTCAATGCCGATGTCGGACCAAG
CGAATCAGAATGTCGACCCTACATTGAAAAGGCTATTCATGAATTGAAAA
CAGATGGTGTCAGGGATGGATCTGGAGAACTGCAATCCGATCAGCCACGT
GGGGACGACGACGATGACGACGATGATGGTGGGCATTCTGCGGTTGATGA
GAAAGATACGATTGAAATTGAAACTGTCGAATTGGATTCCACAGAGGACG
CGAAAAGTGCCAACGATTTGGATGGAGATGGAATACCCGATGACGAGGAC
GATGATATCGATGGGGACGGCATTCCGAACGAAAAGGACGATGATATCGA
TGGAGATGGCATACCGAACGACGAGGATGATGACATCGATGGCGATGGCA
TCCCGAATGAAGATGACGACGATATTGATGGGGATGGTGTGCCCAACTCC
AAGGACGAGGACATCGATGGGGATGGTGTGCCCAACTCCAAGGACGAAGA
CATCGATGGCGATGGCAAGGCAAATCACGAGGATGATGATCTAGATGGTG
ATGGCACTCCAAATCATGAGGACGAAGATCTCGACGGGGACGGTGTGCCC
AACGAGGAAGATGATGACCTCGATGGTGATGGGCAAAATAAATCACGAGG
ATGAAGACCTCGATGGTGATGGAGTGAAAAAATGACGAATACGATGATCT
GGATGGAGATGGCAAAGTAAATCACGAGGACCAAGATCTTGATGGAGATG
GCTTGAAGAATGAAAAGGACGACGATTTTGATGGCGATGGTACCAACAAT
TCTCAGGATGAAAACCTAGATGGTGATGGTGTGCCAAATGAAAAGGATGA
CATCTGGAATGGAGATGGATCCTGTACTACACGACGGTATGTTGATGCGA
TGGACTCCCATGAACACATCACAGAATACGGTAAATGCCGAAGAAGTGTT
GACTACAGAATAGGATGATGGGAGGC
FMO08441.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9297-RE | 4134 | CG9297-RE | 285..1254 | 9..973 | 4440 | 97.8 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 278..1247 | 9..973 | 4440 | 97.8 | Plus |
| CG9297-RC | 4111 | CG9297-RC | 262..1231 | 9..973 | 4440 | 97.8 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 675..1192 | 321..840 | 480 | 74 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 668..1185 | 321..840 | 480 | 74 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 661..1076 | 346..763 | 465 | 75.1 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 654..1069 | 346..763 | 465 | 75.1 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 622..1075 | 385..840 | 450 | 74.6 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 615..1068 | 385..840 | 450 | 74.6 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 597..1114 | 399..918 | 435 | 73.7 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 590..1107 | 399..918 | 435 | 73.7 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 778..1194 | 346..764 | 425 | 74 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 771..1187 | 346..764 | 425 | 74 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 622..1036 | 502..918 | 355 | 73.3 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 714..997 | 321..604 | 355 | 75.9 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 615..1029 | 502..918 | 355 | 73.3 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 707..990 | 321..604 | 355 | 75.9 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 597..880 | 438..722 | 335 | 75.6 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 590..873 | 438..722 | 335 | 75.6 | Plus |
| CG9297-RE | 4134 | CG9297-RE | 1014..1194 | 387..567 | 185 | 73.5 | Plus |
| CG9297-RD | 4127 | CG9297-RD | 1007..1187 | 387..567 | 185 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13774309..13774737 | 151..579 | 2145 | 100 | Plus |
| 3R | 32079331 | 3R | 13773934..13774018 | 69..153 | 425 | 100 | Plus |
| 3R | 32079331 | 3R | 13774504..13774684 | 385..565 | 425 | 82.3 | Plus |
| 3R | 32079331 | 3R | 13774543..13774723 | 346..526 | 425 | 82.3 | Plus |
| 3R | 32079331 | 3R | 13775091..13775169 | 618..697 | 350 | 98.8 | Plus |
| 3R | 32079331 | 3R | 13775381..13775459 | 776..854 | 350 | 96.2 | Plus |
| 3R | 32079331 | 3R | 13775227..13775305 | 697..776 | 320 | 96.2 | Plus |
| 3R | 32079331 | 3R | 13772350..13772410 | 9..69 | 305 | 100 | Plus |
| 3R | 32079331 | 3R | 13774479..13774606 | 399..526 | 265 | 80.5 | Plus |
| 3R | 32079331 | 3R | 13774557..13774684 | 321..448 | 265 | 80.5 | Plus |
| 3R | 32079331 | 3R | 13774504..13774684 | 502..682 | 260 | 76.2 | Plus |
| 3R | 32079331 | 3R | 13774479..13774723 | 438..682 | 250 | 73.5 | Plus |
| 3R | 32079331 | 3R | 13775530..13775576 | 855..901 | 220 | 97.9 | Plus |
| 3R | 32079331 | 3R | 13774596..13774725 | 321..450 | 215 | 77.7 | Plus |
| 3R | 32079331 | 3R | 13774798..13774837 | 579..618 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:19:12 has no hits.
FMO08441.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:41 Download gff for
FMO08441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9297-RB | 231..1178 | 9..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:04:01 Download gff for
FMO08441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9297-RC | 262..1209 | 9..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:57 Download gff for
FMO08441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9297-RC | 262..1209 | 9..954 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:57 Download gff for
FMO08441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13772350..13772410 | 9..69 | 100 | -> | Plus |
| 3R | 13773935..13774018 | 70..153 | 100 | -> | Plus |
| 3R | 13774312..13774737 | 154..579 | 100 | -> | Plus |
| 3R | 13774799..13774837 | 580..618 | 100 | -> | Plus |
| 3R | 13775092..13775169 | 619..697 | 98 | -> | Plus |
| 3R | 13775228..13775305 | 698..776 | 96 | -> | Plus |
| 3R | 13775382..13775459 | 777..854 | 96 | -> | Plus |
| 3R | 13775530..13775589 | 855..914 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:04:01 Download gff for
FMO08441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9600950..9601027 | 698..776 | 96 | -> | Plus |
| arm_3R | 9601104..9601181 | 777..854 | 96 | -> | Plus |
| arm_3R | 9601252..9601311 | 855..914 | 95 | -> | Plus |
| arm_3R | 9598072..9598132 | 9..69 | 100 | -> | Plus |
| arm_3R | 9599657..9599740 | 70..153 | 100 | -> | Plus |
| arm_3R | 9600034..9600459 | 154..579 | 100 | -> | Plus |
| arm_3R | 9600521..9600559 | 580..618 | 100 | -> | Plus |
| arm_3R | 9600814..9600891 | 619..697 | 98 | -> | Plus |
