Clone FMO08442 Report

Search the DGRC for FMO08442

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:84
Well:42
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG33129-RE
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08442.5prime Sequence

1148 bp (1035 high quality bases) assembled on 2010-06-07

> FMO08442.5prime
CAGTCGACATGTCGGAACAATGGGAGGTGGTCTCCAAGTCGCGCAAGCAA
AAGAATCTGGACAAGAAGGTGTCTGCACACAACGAGCAGAAGCGCATCGC
GGCCCAGTTGCCCAAACTGGAGGAGCTGTTGCCAACTCAGCGGTATCGCA
ATTTGTTCGGCAGCAGCAACAACAACAACAGCAAGTCCCATTCCCCTGCG
AAATCTAGTTCAAGTGCCTCATCTTCCTCAAAAGCCAATAAGTCGCCAGT
TAAAAAGCACACCGCAAAGAATGCCTCTACCCAAAAAAGGACCACGTCGG
CAGCCGCATCGAAGCCAAAGACTCTGGAGCTGGCCTTGAGGAACATCACC
CGGGATGATTTTGCTGCCCAACTGGAGCAGGTGAAGCTCAGTTGTCCTGG
CTCCGAGCTGCGCTGGTTAAGCCATATTGCGCTATACTTCAATGAAGCCT
TGTCCTATGACTGCGATCCCATCTTCTCCGGCCGCTCGGCTCAGTATCCC
AGCAATTTGGCCAGCGCCTCGCTCAAGTACTCAATTGTGGAGTTTCTGGG
CAGTGTGGGCGAGCAAAACCTGGAGTATTTCTTCTACTCCCTGCTGGATA
GCATGTCAACGGATCTAAACAACAATCAGACAGTGGCAGGTTACAAGCTC
ATCCTACAGTTGATCGGTCAAAACTGGCCGAACATTTGTTCTAGGAACCT
GGCCAAGACTGCGTTGCTAAGGAACTCCTATCAGAACCGTAGCAACATCT
GCCTGAGCATCCTGTGGGCAATTGGACAAGGTGGCTATCAGTCCCTAAAC
GAGGGCGTTCGCGTGTGGCAGAACCTGATGCTGCCCAACCTGGAGCTAAA
GCAGTACACCAAGTTTGTGGTCGAGTATATGGAGCGGGCTCTGAGTGCAG
CAGCTGTCCGGAAGACGGCGGATCCTCTGCAGATCAACCAGCAGAGTTCT
TTGCACTTACAATGCGCTCAATGCACCCTTATAACCACTGCCCAAGGAAT
GGCAGCAAGTCTTGAGCGTATGCGCGTTTGTGCTTCACACTATATCACAG
TCCTGTGAAGCATGCCAACATATCCTTACGCTTCTTTCGGAAATAGCGCC
GATCCAGCCAACTAATGAATTCGAGCTTTATTATGTCCTCCTCAGCCC

FMO08442.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG33129-RF 2815 CG33129-RF 80..1202 7..1118 5100 97.8 Plus
CG33129-RE 2652 CG33129-RE 152..1274 7..1118 5100 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10968992..10969580 1008..422 2695 98 Minus
2L 23513712 2L 10969633..10969928 425..130 1465 99.7 Minus
2L 23513712 2L 10970002..10970124 129..7 615 100 Minus
Blast to na_te.dros performed 2014-11-28 22:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6801 104..183 123 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6875..6959 158..249 119 65.6 Plus
roo 9092 roo DM_ROO 9092bp 1048..1161 66..183 119 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6680..6780 80..183 116 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2295..2329 148..183 114 83.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1557..1582 158..183 112 92.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6759 158..183 112 92.3 Plus

FMO08442.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:40 Download gff for FMO08442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33129-RE 148..1261 1..1106 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:27 Download gff for FMO08442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33129-RE 148..1261 1..1106 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:27 Download gff for FMO08442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33129-RE 148..1261 1..1106 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:27 Download gff for FMO08442.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10968962..10969576 426..1035 98 <- Minus
2L 10969633..10969928 130..425 99 <- Minus
2L 10970002..10970128 1..129 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:27 Download gff for FMO08442.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10968962..10969576 426..1035 98 <- Minus
arm_2L 10969633..10969928 130..425 99 <- Minus
arm_2L 10970002..10970128 1..129 97   Minus