FMO08443.5prime Sequence
1168 bp (1053 high quality bases) assembled on 2010-06-07
> FMO08443.5prime
CAGTCGACATGATGTTAGACATTAAGAAGACCAGAGGATTCCACAAGATT
CCACAGGCATCCAAATTACAGTCAACAACGAAAACATCATCAGTAGTAGC
CACATCAGCATCAAGTCAAAACGAAGTGCCATCACCAGGAGGATCGGCTG
GATCAAAAGTTGGAGCTACCAATCCAGTGCGAGCGGCCAACCAGCGCTTC
TTCCTAGTGTCCAGCTACAAGGACCCCACATTTCTGAAGGCCGAATGCGA
CCTGGCCCATGCCCATGTGACAACCAGCAAAGTGAAAACCACGTTGCAAC
CGCACCGGCGGAGTCGTGCTGGTGAGGATTCAAGGAACAACAACTACAAC
ACTAGCCGGGCACCAACGCTGATTAATATGCGACGCCCGTCTCTGTTCAA
TGGCAATCAGCAACCAACCACCACCAACAGCACCACCATCAACAACACCA
CCAGCAGGAACACCACCAGTAACACCAGCAACGGGGTGCTCAAGTACAGC
GTGCGCTCCACGACGGCAACTGCAACTTCAACGTCTACCAGGAACTACGG
CAAGCTGAAACCGCTCAATAACAACCAAACGACCGCTGGAGTAGCTATGA
TGAATGGACACACCAATAATAATAACAACAACACCAGAAACAGCAGCAAC
ATCAACAACGGTGGCAATAACAACATGCAACGCCAACAACAGCAGCACGA
TGACATAAGCTTCATAGACAGCGATGATCCGCCGGCAACTGGTGGCCCTG
AAGCCGGAATATCGACAACCAAGACGAGCATTTGTTACTTCAGCCCATCA
CCCCGCCGCTGCAGCTGCGGCACGAGCAAAATCAAGTTCAGCAACAGGAA
GAACAGCCGCAGCCCAGCAGCTCCAAGTCTGCCAGCCATCGCTATCCACG
ACCCAAGTCCACTATTATAGCATCGGCCCACTCGAATTTGCGGCCAGCTT
TGAGAAGTTTAGTGGTGTCCTCTATAGGCAGACCAATGGCGAGACGAACA
TTGAGAGCAGACCAGTAGCAATGCCAGAAGAAACGCATTGATTCATTGAG
TATTAGCCTCGATAGAAAAGTTCACAACCTCAGTGCAGAAGAAACAATCC
CGGGCCTTCTGGATCAGTATAGGAACTGGCAATGCTACAGCGTCGGATTA
CGAGGAGACGCTGTCCTG
FMO08443.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14619-RI | 4341 | CG14619-RI | 1193..2356 | 3..1157 | 5340 | 97.9 | Plus |
| CG14619-RG | 5178 | CG14619-RG | 2066..3229 | 3..1157 | 5340 | 97.9 | Plus |
| CG14619-RF | 4305 | CG14619-RF | 1193..2356 | 3..1157 | 5340 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22463903..22465047 | 9..1144 | 5085 | 98.1 | Plus |
Blast to na_te.dros performed 2014-11-28 20:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..3006 | 398..592 | 180 | 59.8 | Plus |
FMO08443.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:38 Download gff for
FMO08443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14619-RC | 30..1205 | 1..1165 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:11 Download gff for
FMO08443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14619-RF | 1191..2366 | 1..1165 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:35 Download gff for
FMO08443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14619-RF | 1191..2366 | 1..1165 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:35 Download gff for
FMO08443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22463896..22465071 | 1..1165 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:11 Download gff for
FMO08443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21865732..21866907 | 1..1165 | 97 | | Plus |
