FMO08444.5prime Sequence
1142 bp (1042 high quality bases) assembled on 2010-06-07
> FMO08444.5prime
CAGTCGACATGAGCCGCCAACACCAGCGGCACCACCAGCAGCATCACCAC
CTGCCGCCGCACCAGCAACCGCAGCAGCAGATGCCGCAACAACAGCAGCA
GCTGACGGCGCAGCAGCAGCAACAACAGCAGCTGCTGATGGCGGAGCACG
CGGCGGCCGCGGAGGCGGCGGAGCTATTCGACCTGCTGTGCGTGGCCACA
ACGATGCGCCAGATCCTGGCGCTCCATCGGGCCATGTGCGAGGCTGTGGG
ATTGAGACCCTCGCCTCTGAACGACTTCTACCCACGGCTAAAGGCCAAGG
TGCGTTCGTGGAAGGCGCAGGCCCTGTGGAAGAAGTTCGACGCCAGAGCT
GCCCATAGAGTCTACGGCAAGGGAGCTGCCTGTACTGGCACACGCGTCCT
GGTCATCGGAGCAGGGCCCTGTGGACTGCGCACCGCCATCGAGGCCCAAC
TGCTGGGCGCCAAGGTGGTGGTGCTGGAGAAACGCGATCGCATCACCCGG
AACAATGTGCTCCATCTGTGGCCATTCGTCATCACGGATCTGCGCAACTT
GGGCGCAAAGAAGTTCTACGGCAAGTTTTGCGCCGGCTCCATCGATCACA
TCTCCATTCGGCAGCTGCAGTGCATGCTGCTCAAGGTGGCGCTGCTCCTG
GGCGTAGAGATCCACGAGGGAGTCAGTTTTGATCACGCTGTAGAGCCCTC
TGGCGATGGCGGCGGATGGAGGGCAGCTGTTACTCCCGCAGATCATCCTG
TATCTCACTACGAATTCGATGTGTTGATCGGAGCGGATGGCAAGCGGAAT
ATGCTGGACTTTAGGAGGAAGGAGTTCCGCGGGAAGCTGGCCATCGCTAT
TACAGCGAACTTTATCAACAAGAAGACGGAGGCGGAGGCTAAAGTAGAGG
AGATCAGTGGGGTGGCTTTCATCTTCAACCAGGCCTTCTTCAAGAGCTGT
ACGGAAGACGGGCATCGACCTGAAAACATCGTCTACTACAAGGACGAGAC
GCACTACTTCGTGATGACGCCCAAGAAGCACCAGTCTAATTGACATGCCG
TTATTATCGAGATATTGCCCGATCCCGGCCAACCTCCTCCGCCCCTGCCA
TGTGATACACAAAGCCTGCACCGCAACATATGGCACCGAGGC
FMO08444.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mical-RL | 15345 | CG33208-RL | 233..1348 | 9..1121 | 5175 | 98.1 | Plus |
| Mical-RK | 15264 | CG33208-RK | 185..1300 | 9..1121 | 5175 | 98.1 | Plus |
| Mical-RQ | 10116 | CG33208-RQ | 260..1375 | 9..1121 | 5175 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10020309..10021382 | 1079..9 | 5005 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:35 has no hits.
FMO08444.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:37 Download gff for
FMO08444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mical-RG | 28..1107 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:09 Download gff for
FMO08444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mical-RK | 177..1258 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:32 Download gff for
FMO08444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mical-RQ | 252..1333 | 1..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:32 Download gff for
FMO08444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10020309..10021386 | 1..1079 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:09 Download gff for
FMO08444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5846031..5847108 | 1..1079 | 98 | | Minus |
