FMO08446.5prime Sequence
1115 bp (992 high quality bases) assembled on 2010-06-07
> FMO08446.5prime
CAGTCGACATGGCCGCCACCGATGGCCAAATCATATTGGCCGCCTCCCGA
TTCGGCGATGCCACGCCCGTTTACCTGCGCGACTTTTCCAAGCAGCCGCT
GCCGGCGGTGGCCAAGATCATCAAGGGCCAGCACCAGGCGCTGGGGGTGC
CCACATTGTCGGCCCCATCTCTGCAGAGCACCGCCCTATTTCTGAGCGCC
GGCAAGAAGTACCAGATCCTGGCCCAGCCCATCAAGATCAAGGAGGGTCG
CAAGCCCACCAATGTGGGCGCCAAGGTGCTCATCCCGGAGACCTACGGCG
GCTACTTCGAGCTCCTCAGCGAGGATGGTCGCTCCACGCGATGCATTGAC
TCCGTGCTGGAGCTCTCGCGACGGCGAAACGCCCGCGTCCTGGTGCGGGA
GACCTTTCGATGCCAGCAGATGAACCGGACTATCCACGCCGGCGAACTGC
TGACCACCATGAACGACAACGGGAAGTACCTGCAGTGCAGGAACATCAAG
GACGAGATCATCAATCTGCCACTCGATACCAAAGCCAAGTTCTCGCCGAT
CGCCAGGGAGGACAGCATCAGCGGTGTCCACACCGTCAAGAATCTGCTGC
TCAAGCGGATGCCAGTCATCGTGAGACTCGTTCACGGCAGTGCGCCCAAG
GGTCTGAAACAGCCATTTGTGCCCGAACTGCGACTGCTGGGCTGCGTGGA
GATCGACAGGATATTCGCGTTGCCACTGCAAAAGGACACGGATCTGGTGC
CGGTGCCGCTGATGCCAAGATCAAGCTGCAGCGAGCCAAGAACATGGAGC
AACTGGAGCACTTCATCGAGTACTCGCGATTCCTGGACAAGGCGCAGCGA
TTGCTGGCCGATGCACGCGATCGCCTGCAGATCGTCGATCTCAAGCTGAG
CGAGAAGGAAAAGAAAGACTCCAGTTCAATAGTCGCAAACAGCGAGTCTG
CCTGCCGGTGGTCATGCTGCCATCCTGCAGCGGGAATGGCCAGTGGAACT
GCGAAAGTGGTTATGTGCTGGCGCAAGAGTGCCTACTGGTGATTCCTGTC
GAGCCACGCAGCAGGCCACTGACAACAGCGGAATTGGCGGAGGAATCACA
CCGAATCGATCTTAT
FMO08446.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sano-RF | 4279 | CG12758-RF | 799..1908 | 5..1115 | 4865 | 96.7 | Plus |
| sano-RE | 4614 | CG12758-RE | 1134..2243 | 5..1115 | 4865 | 96.7 | Plus |
| sano-RD | 4279 | CG12758-RD | 799..1908 | 5..1115 | 4865 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18955506..18956126 | 5..625 | 3090 | 99.8 | Plus |
| 2R | 25286936 | 2R | 18956255..18956662 | 624..1033 | 1570 | 95.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:31 has no hits.
FMO08446.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:51 Download gff for
FMO08446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sano-RC | 1043..2091 | 1..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:00 Download gff for
FMO08446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sano-RC | 1030..2078 | 1..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:35 Download gff for
FMO08446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sano-RD | 796..1844 | 1..1052 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:35 Download gff for
FMO08446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18955503..18956126 | 1..625 | 99 | -> | Plus |
| 2R | 18956257..18956681 | 626..1052 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:00 Download gff for
FMO08446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14843008..14843631 | 1..625 | 99 | -> | Plus |
| arm_2R | 14843762..14844186 | 626..1052 | 94 | | Plus |
