FMO08448.5prime Sequence
1134 bp (1013 high quality bases) assembled on 2010-06-07
> FMO08448.5prime
CAGTCGACATGCGTTCTCGCAGCAATTCGGGCGTCCGTTTGGACTACTAT
CAGCGCATTGTGCATCGTCTGATCCTGGCCCACCAGGAACCGGTCACCGG
TCTGTTTCCCGCCTCGAATGTGAACTCGCACGCCTGGATCAGGGACAATG
TGTACTGCATCTTGGCCGTTTGGGGCTTGTCCATGGCGTACAAGAAGATT
GCCGATCAGGACGAGGATCGGGCCAAATGCTATGAGCTGGAGCAGAGCTG
TGTAAAGCTAATGCGTGGCCTGCTCATGGCCATGATGAACCAGAAGGACA
AGGTAGAGAAGTTCAAGATGACCCAGAGCCCGTACGATTCGCTGCACGCC
AAGTATTCCAGCAAGAACGGCTTGCCCGTGGTCGATGACAATGAGTGGGG
TCATCTGCAGATCGATGCCGTGTCCCTGTACCTGCTGATCCTGGCCCAGA
TGACGGCCTCCGGCCTGCAGATCGTCTTCTCCCTGGACGAGGTGTCATTC
ATCCAGAATCTGGTCTTCTACATCGAGTCAGCGTACTCGATTCCCGACTA
TGGCATTTGGGAGCGCGGCGATAAAACCAATCATGGTGAACCCGAGCTGA
ATGCCAGCTCCATTGGCATGGCCAAGGCGGCGCTGGAGGCCATGAACGAG
CTGGATCTGTTCGGAGCCCGTGGCGGTCCGGCTAGTGTCATCCATGTGCT
GGCCGACGAGGCCCACAAATGCCAGGCGGTGCTGCAGTCGATGCTGCCGC
GCGAGTCGAATAGCAAGGAATTGGATTCCGGTCTGCTGTGCGTCATCGGC
TTTCCCGCCTTTGCTGTGGACGATGCCCAGCTGATACACAACACCAAAGG
ATGCCATTCTATCCCGTCTGCAGGGCAAGTACGGCTGCAAGAGATTCTTG
CGCGATGGCTATCGCACACCGGAAGAGGATCCCTCGAGGCTATACTACGA
GCGCTGGGAGCTGCGCATGTTCGAGAACATCGAGTGCGGTGTCCGCTATC
TACTGCTACCTAATCCTGTCCACGCCTTCCAGAGCGACAGCGGGCGGTGG
AGGAGTACGCCCGCCGGTTGAGAAGATCATGGTTGCATCGTAGATGGCAT
CTTACTTGTTCGAGAGCCTATGCAGGGCCCCAGG
FMO08448.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7766-RI | 4588 | CG7766-RI | 325..1456 | 9..1134 | 5220 | 98 | Plus |
| CG7766-RD | 4639 | CG7766-RD | 325..1456 | 9..1134 | 5220 | 98 | Plus |
| CG7766-RC | 4873 | CG7766-RC | 325..1456 | 9..1134 | 5220 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9102491..9103071 | 589..9 | 2905 | 100 | Minus |
| X | 23542271 | X | 9101732..9102234 | 1083..585 | 2145 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:00:35 has no hits.
FMO08448.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:48 Download gff for
FMO08448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7766-RC | 301..1405 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:38 Download gff for
FMO08448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7766-RC | 317..1421 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:34 Download gff for
FMO08448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7766-RC | 317..1421 | 1..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:34 Download gff for
FMO08448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9101714..9102233 | 586..1100 | 96 | <- | Minus |
| X | 9102495..9103079 | 1..585 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:38 Download gff for
FMO08448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8995747..8996266 | 586..1100 | 96 | <- | Minus |
| arm_X | 8996528..8997112 | 1..585 | 99 | | Minus |
