FMO08449.5prime Sequence
979 bp (706 high quality bases) assembled on 2010-06-07
> FMO08449.5prime
CAGTCGACATGAAAGTCAAAGTGGAGCGCACAACGAAAAAGCCCGCCATC
AGAAAGCCCGAGGATCCAGATCCGGCGGAAGAGGACAGGGTCAAGATGGT
GCAGGATGACCCAGAGGACCAGGAGAACCAGGCGGTGGATGAGGAGGAGC
TGGACTTTCTGCCCGCCGATCTAAGCGCTGCGATATCGACGGCGACAACG
AAAATAGCAACACCGACGCGCAATCTTATCCTCGGCAACTTTGAGACCGG
CCAGAGTGTTCTCACACTGACGACGCCCACGTTGACGCCGACCACCACGC
GCAACATCGAGGACACACTGGGCCACTTGCTCTCGGACACGCAGACCGAT
CGTGTGGCTGGTTGCGCGGGATTTGCAGTGCCAAAGGTGCTACCCAATGC
CATTGATGTCCTGGGCATGGGTATTCCCACCGGTGTTTCGTCGCTCCCAC
TTCAGCAGACATTCGATTTGAGCCTGGGGCAGGGCAGCGAGTCCGAGGAC
TCCTACGCTTCGTACAACGATACGCAGATGAACGAGGAGCAGGACACGAC
CGATACTTCAAGTGCCCATACGGACAGCACCTCGTACCAAGCTGGCCACA
TCATGGCGGGCAGCGTGAACGGCGGCGGTGTCACAACTTCTCCAATGTCC
TGGCCGCCGTGTGCTCTAGCCGCGGATGGCGTCGGTGGGCAGCAGCACAG
CGAATACCTCAATACGCCCGGCTCGTCGTGGCGGTGGCAAACCCCCCACC
GGTCGACTAACATGACCCCCGGAGAAGGAACATAAACGGGCCTGTGCGCC
GTGAACGGAACAAATGGTTGCGGCCCGTTGCCACAATATGCGCGTGGACC
CCACCATCCACCTCACCGATGGAGTGGATCTCTGGCAAAAGCGGTGCAGA
GCTGTGCAAGGATATCTAGTGGGTGACAATACTGAACCTTTGGAGTTGTT
CTGGGCCCCCCCCCGACCCCCTGCCAATG
FMO08449.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kay-RA | 3585 | CG33956-RA | 709..1620 | 9..916 | 3785 | 95.2 | Plus |
| kay-RG | 3738 | CG33956-RG | 1084..1773 | 231..916 | 2675 | 93.7 | Plus |
| kay-RF | 4574 | CG33956-RF | 1920..2609 | 231..916 | 2675 | 93.7 | Plus |
| kay-RG | 3738 | CG33956-RG | 709..930 | 9..230 | 1110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29791393..29791720 | 231..558 | 1625 | 99.7 | Plus |
| 3R | 32079331 | 3R | 29773600..29773821 | 9..230 | 1110 | 100 | Plus |
| 3R | 32079331 | 3R | 29791787..29792099 | 559..869 | 855 | 89.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:18:56 has no hits.
FMO08449.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:28 Download gff for
FMO08449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RA | 614..1471 | 1..856 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:49 Download gff for
FMO08449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RA | 701..1558 | 1..856 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:49 Download gff for
FMO08449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RA | 701..1558 | 1..856 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:49 Download gff for
FMO08449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29773592..29773821 | 1..230 | 98 | -> | Plus |
| 3R | 29791393..29791720 | 231..558 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:49 Download gff for
FMO08449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25599314..25599543 | 1..230 | 98 | -> | Plus |
| arm_3R | 25617115..25617442 | 231..558 | 99 | -> | Plus |
