FMO08450.5prime Sequence
1074 bp (939 high quality bases) assembled on 2010-06-07
> FMO08450.5prime
CAGTCGACATGGACGACATACGTAGCAGCATAGATGATATGATGGACCGC
TTTAACGACAGCATTACCCATTCGGCACCCAAGAAACTACTTTTCAACCG
GCTTTCCGCCTCCTTCGATTTAGGAGTTTCACCCAATAAGCGACGTCGGG
AACGGGAATCACCGGAACGCAGTCTTAACGACACCGCCTCTTCCCTCAAT
ATGCCCGCCAACGATTCCATGGCTTCTTTGCAGAACAGCAAACTACGGAC
CGAGCTGATCGAAACCAAGGCCATAGTAATTCAGCTGCGTAACGAAATCG
AAAAGAAGAGCCGGGAACACAAAGAGGCCATATTGCTGGCTGAGAACAAG
AGCACGGCCTTAAAGGATCAGTGCGACATCACCAGCAAGAAGAATTTGGA
GCTGCAGGACGATCTTAAGGCGCTTCGTAAGCGAGAGCTGGTCTTGAAGA
ATGAGGCCAGTCGGGCCACCGCCGAGTTGAACCAACTTAGGCTTAAGTTC
GATGAATCCACGCTCAAGTTGCAGAAGGAGAAGTACCTGCAGAAGGAGGA
TGCCCGCGATGTGCACCTGTGCATCAACAACGAACTGAGCGAATATCGCC
GCATAGCCCAGCGGGCCGATCTCGAACTGCAGTCTACGCGCAACGAACTG
GAGCGCCTACGTCAACTCAATGAGGAGTTACAGGCCAGGGCTTCCGGATT
CGAGCAGCTGCGCGCCAATCACGAGAAGCAAACGCAAAGCTTGAAGGTGG
CCAACGATCGCATTCAGGAGCTGGAGTTCGAAATTCAGTCGTATAGCGAC
TGGAAGGAGGTGCTCAAAACCTCACGAGAGCGCCTGGCCAGTGTTCCAGA
TTTGCTAGCTGAGGTGGAGCATCTGCGCAGCCACAACAAGCATTTAAACA
CTCTGATAGCCGATAAATTGCTTCTGGATGAGCAGTCTACGACTACAAAC
GCTAATTGCAGCGGGAGAATGGTGCTCGGCCGTGCAGCTTCCCCTCCAGT
GATCCTGCTTCCACATGAGCAGACTCAAGGATTGGTCATGTTGCCAGGAA
TCCTGTCTTGCCACCTTTGTTCAG
FMO08450.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mad1-RA | 2439 | CG2072-RA | 109..1140 | 9..1035 | 4700 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9290430..9291280 | 979..130 | 4025 | 98.5 | Minus |
| 2R | 25286936 | 2R | 9291337..9291457 | 129..9 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:18:47 has no hits.
FMO08450.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:27 Download gff for
FMO08450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TXBP181-like-RA | 98..1057 | 9..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:44 Download gff for
FMO08450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mad1-RA | 109..1068 | 9..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:42 Download gff for
FMO08450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mad1-RA | 109..1068 | 9..967 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:42 Download gff for
FMO08450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9291337..9291457 | 9..129 | 100 | | Minus |
| 2R | 9290435..9291280 | 130..974 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:44 Download gff for
FMO08450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5177940..5178785 | 130..974 | 98 | <- | Minus |
| arm_2R | 5178842..5178962 | 9..129 | 100 | | Minus |
