FMO08451.5prime Sequence
1147 bp (1037 high quality bases) assembled on 2010-06-07
> FMO08451.5prime
CAGTCGACATGAAGATGGCATCTCAACGCTTCTGCCTGCGGTGGAACAAC
CACCAGAGCAACCTTCTGTCCGTCTTCGACCAGCTGTTGCACGCAGAAAC
CTTCACAGATGTGACGCTGGCCGTCGAGGGGCAACACCTGAAGGCACACA
AGATGGTGCTATCCGCCTGCAGTCCCTACTTTAATACCCTCTTTGTAAGT
CATCCGGAAAAGCATCCGATTGTCATACTTAAGGATGTGCCCTACTCGGA
CATGAAGTCGTTGCTAGACTTTATGTACAGGGGCGAGGTCTCAGTGGACC
AGGAGCGACTCACTGCATTCCTGCGCGTGGCCGAGAGCCTGCGCATCAAG
GGCCTCACCGAGGTCAACGACGACAAGCCCTCGCCGGCAGCAGCAGCTGC
AGGAGCGGGTGCGACGGGCTCTGAGAGCACAGCCACTACACCCCAGCTGC
AGCGCATCCAACCGTATTTGGTGCCCCAGCGGAATCGCTCGCAGGCCGGC
GGTCTGCTGGCCAGTGCCGCCAATGCCGGAAATACACCCACCCTGCCGGT
GCAGCCATCGCTGCTCAGCTCGGCCCTGATGCCCAAGCGAAAGAGGGGCA
GACCCCGGAAGCTATCTGGCAGCTCGAATGGCACGGGGAACGACTACGAC
GACTTTGATCGCGAGAACATGATGAACGACTCCTCCGACCTGGGCAACGG
CAAAATGTGCAACGAGTCCTACTCCGGCAATGACGATGGCTCCGACGACA
ATCAGCCGAACGCAGGACACACGGATGATCTAAATGAAAGTCGCGATTCT
CTGCCCTCGAAACGATCAAAGAACTCCAAGGATCACCGCGTGGTGAGCCA
TCATGAAGACAACAGCACTTCCGACGGAAACGACAGCGATGGCGAAAGTC
TGGACACATCATATATGGAACCTCAACTTATGCTGGACGAATATGACGAG
CCCGTAGAGTCAAGTACACCCGCTCACCGACAACAGCTCACCACGCAGGA
CCCACGGATGGTAGTCACCTCACCGAGCAGGCGCGCAACCAGCCTTCTCA
TCGGCGCCCAGAAAATACTGAGTGGTAAACAGCAGCACGCGGCGCCAGCG
TAATCAACTTACATAATCGGAATGGCGGCTGGTGGAAGCAAGGGAAA
FMO08451.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ttk-RH | 4252 | CG1856-RH | 251..1390 | 9..1136 | 5200 | 97.8 | Plus |
| ttk-RD | 4254 | CG1856-RD | 253..1392 | 9..1136 | 5200 | 97.8 | Plus |
| ttk-RC | 4497 | CG1856-RC | 496..1635 | 9..1136 | 5200 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31727620..31728261 | 151..792 | 3195 | 99.8 | Plus |
| 3R | 32079331 | 3R | 31727291..31727434 | 9..152 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 31729631..31729798 | 873..1036 | 610 | 96.4 | Plus |
| 3R | 32079331 | 3R | 31728392..31728479 | 786..873 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:41:21 has no hits.
FMO08451.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:23 Download gff for
FMO08451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttk-RD | 568..1599 | 9..1036 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:47 Download gff for
FMO08451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttk-RC | 496..1527 | 9..1036 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:03 Download gff for
FMO08451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttk-RC | 496..1527 | 9..1036 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:03 Download gff for
FMO08451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31727291..31727434 | 9..152 | 100 | -> | Plus |
| 3R | 31727622..31728254 | 153..785 | 100 | -> | Plus |
| 3R | 31728392..31728479 | 786..873 | 100 | -> | Plus |
| 3R | 31729632..31729798 | 874..1036 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:47 Download gff for
FMO08451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27553013..27553156 | 9..152 | 100 | -> | Plus |
| arm_3R | 27553344..27553976 | 153..785 | 100 | -> | Plus |
| arm_3R | 27554114..27554201 | 786..873 | 100 | -> | Plus |
| arm_3R | 27555354..27555520 | 874..1036 | 96 | == | Plus |
