FMO08452.5prime Sequence
1143 bp (1020 high quality bases) assembled on 2010-06-07
> FMO08452.5prime
CAGTCGACATGTCGGAGGGCAGCGATAACAACGGGGATCCCCAGCAGCAG
GGGGCGGAGGGGGAGGCGGTGGGCGAGAACAAAATGAAGTCCCGCCTCCG
CAAAGGAGCCCTCAAGAAGAAGAACGTCTTCAATGTCAAGGATCACTGCT
TCATCGCCCGGTTCTTCAAGCAGCCCACGTTCTGCTCCCACTGCAAGGAC
TTTATCTGCGGCTATCAGTCGGGATATGCATGGATGGGCTTCGGAAAGCA
AGGATTTCAGTGCCAAGTTTGCTCCTATGTGGTGCACAAGCGGTGCCACG
AATATGTCACCTTCATCTGCCCGGGCAAGGATAAGGGCATCGATTCGGAC
TCACCAAAAACTCAACACAATTTCGAGCCATTCACATACGCAGGACCCAC
GTTCTGCGATCATTGTGGGTCCCTGCTGTATGGCATTTACCACCAGGGTC
TCAAATGCTCAGCATGTGACATGAACGTGCATGCCCGCTGCAAGGAGAAC
GTGCCCAGCCTTTGCGGATGCGATCACACGGAGCGGCGGGGTCGCATTTA
TCTGGAGATCAATGTCAAGGAGAATCTGCTAACTGTCCAGATCAAGGAGG
GTCGCAATCTCATACCCATGGACCCAAACGGACTGAGCGATCCCTATGTG
AAGGTGAAGCTAATTCCAGATGACAAGGATCAATCCAAGAAGAAGACTCG
CACCATTAAGGCTTGCCTAAATCCTGTCTGGAATGAGACACTCACTTATG
ATCTAAAGCCCGAAGACAAGGATCGACGCATCCTGATCGAAGTGTGGGAC
TGGGATCGCACTTCACGCAATGACTTTATGGGTGCTTTGTCCTTCGGAAT
CTCAGAGATCATCAAGAAACCAAACCAATGGCTGGTTCAAACTGCTCCCC
CAGGACGAAGGCGAGTACTACAATGTGCCATGTGCGGATGATGAGCAGAC
CTACTGAAGCTCAAGCAGAACATCGCAAGAGCCGATGGTATGCGCAGCGA
TACGACACGCATACTTCTCAAAGATTTGATCCGGGCCACGGACTTATTCA
TCAGTTCTCGCAGGCTCATTGAAAGTTTGCTGCTGACGCAAGCAGCGGAT
TGATGGCATAGAACTCATAAGGATGTACTTCGACGACACGTCG
FMO08452.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkc53E-RB | 2696 | CG6622-RB | 376..1424 | 9..1045 | 4905 | 98.4 | Plus |
| Pkc53E-RF | 4711 | CG6622-RF | 399..1420 | 9..1045 | 4405 | 95.5 | Plus |
| Pkc53E-RA | 3175 | CG6622-RA | 882..1903 | 9..1045 | 4405 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16941144..16941452 | 749..1045 | 1005 | 93.5 | Plus |
| 2R | 25286936 | 2R | 16926608..16926807 | 9..208 | 1000 | 100 | Plus |
| 2R | 25286936 | 2R | 16940901..16941057 | 592..748 | 785 | 100 | Plus |
| 2R | 25286936 | 2R | 16940090..16940221 | 460..591 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 16932463..16932578 | 347..462 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 16931197..16931279 | 266..348 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:19 has no hits.
FMO08452.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:22 Download gff for
FMO08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkc53E-RB | 339..1415 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:29 Download gff for
FMO08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkc53E-RB | 368..1444 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:24 Download gff for
FMO08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkc53E-RB | 368..1444 | 1..1060 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:24 Download gff for
FMO08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16940901..16941057 | 592..748 | 100 | -> | Plus |
| 2R | 16941144..16941492 | 749..1075 | 92 | -> | Plus |
| 2R | 16926600..16926807 | 1..208 | 98 | -> | Plus |
| 2R | 16928125..16928151 | 209..235 | 100 | -> | Plus |
| 2R | 16931112..16931143 | 236..267 | 100 | -> | Plus |
| 2R | 16931199..16931278 | 268..347 | 100 | -> | Plus |
| 2R | 16932464..16932578 | 348..462 | 100 | -> | Plus |
| 2R | 16940093..16940221 | 463..591 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:29 Download gff for
FMO08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12828406..12828562 | 592..748 | 100 | -> | Plus |
| arm_2R | 12814105..12814312 | 1..208 | 98 | -> | Plus |
| arm_2R | 12815630..12815656 | 209..235 | 100 | -> | Plus |
| arm_2R | 12818617..12818648 | 236..267 | 100 | -> | Plus |
| arm_2R | 12818704..12818783 | 268..347 | 100 | -> | Plus |
| arm_2R | 12819969..12820083 | 348..462 | 100 | -> | Plus |
| arm_2R | 12827598..12827726 | 463..591 | 100 | -> | Plus |
| arm_2R | 12828649..12828997 | 749..1075 | 92 | -> | Plus |
