FMO08453.5prime Sequence
1079 bp (924 high quality bases) assembled on 2010-06-07
> FMO08453.5prime
CAGTCGACATGGGCATCTTACTGAGTGATGGCGATTCCACATCGGATCAG
CAGTCGACTCGCGACTATCCCCACTTCAGCGGCGACTATCAGAACGTGAC
GCTGTCGGCTGCCTCTGCATCCACATCCGCATCCGCTTCTGCCACCCACG
TCGCCGCCGTCAAGATGTACCACAGTAGCGCCGTTGCGGCATACACGGAC
CTGGCTGCCGCCGGTAGTGCCGCAAGCGCCGGAGTCGGAGTCGGGGTGTC
CGGCTATCACCAGCAGGCGGTAAACGCTCCCGTTTACGTGCCATCCAACC
GACAGTACAACCACGTGGCCGCTCATTTTGGAAGCGCTGCGGCGCAGAAT
GCCTGGACCACGGAAGGATTCGGATCGGCGCATGCACAGTTCTACTCGCC
AAACGCCGCTGTGATGATGGGCTCGTGGCGCAGTGCCTACGATCCGTCGG
GCTTCCAAAGATCCTCGCCCTACGAGAGCCCTATGGACTTCCAGTTTGGC
GAGGGACGCGAGTGCGTCAATTGCGGTGCCATATCGACTCCGTTGTGGCG
ACGGGATGGAACCGGACACTATCTGTGCAACGCCTGCGGACTGTACCATA
AGATGAACGGAATGAACCGGCCGCTGATCAAGCCTAGCAAGCGCCTGGTG
AGTGCAACTGCCACTCGGAGGATGGGCTTGTGCTGCACCAACTGCGGCAC
TCGGACCACCACACTTTGGAGGCGCAACAACGATGGCGAACCCGTGTGCA
ATGCCTGCGGACTGTACTACAAGTTGCACGGTGTTAACAGACCACTGGGC
ATGAGGAAGGATTGCATTCAGACCAGGAAACGAAAGCCCAAGAAAACGGG
AAGTGGTCGGCGGTGGGAGCGGGCACTGGATCCGGAACAGCTTCACTTTG
GAAGGCCTTCAAGGAGTGCAAGGAGGAGATGTCTCAACCCTCCCTCAGCC
TGGAACGCCTTAGCTTCGTAAGCTGCACACGGAATATGAAGCAGCGGCAC
CAGCAGTATTAGCACCTTGATGGGACTTCACAGTCGGGAGCAGCGTAGCA
GAAGCAAAGGCAATAATCAAAAGAATCGC
FMO08453.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnr-RA | 2720 | CG3978-RA | 494..1547 | 8..1057 | 4780 | 97.5 | Plus |
| pnr-RD | 3840 | CG3978-RD | 759..1786 | 34..1057 | 4650 | 97.5 | Plus |
| pnr-RB | 2786 | CG3978-RB | 586..1613 | 34..1057 | 4650 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16038587..16039207 | 36..656 | 3090 | 99.8 | Plus |
| 3R | 32079331 | 3R | 16039270..16039542 | 657..928 | 1165 | 96 | Plus |
| 3R | 32079331 | 3R | 8160976..8161109 | 634..501 | 370 | 85.1 | Minus |
| 3R | 32079331 | 3R | 16039621..16039717 | 936..1033 | 255 | 90.9 | Plus |
| 3R | 32079331 | 3R | 16018047..16018168 | 723..844 | 235 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:18:37 has no hits.
FMO08453.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:34:20 Download gff for
FMO08453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnr-RA | 683..1734 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:37 Download gff for
FMO08453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnr-RA | 487..1538 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:37 Download gff for
FMO08453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnr-RA | 487..1538 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:37 Download gff for
FMO08453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16038587..16039207 | 36..656 | 99 | -> | Plus |
| 3R | 16039270..16039546 | 657..931 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:37 Download gff for
FMO08453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11864309..11864929 | 36..656 | 99 | -> | Plus |
| arm_3R | 11864992..11865268 | 657..931 | 97 | -> | Plus |
